View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16056_high_39 (Length: 311)

Name: NF16056_high_39
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16056_high_39
NF16056_high_39
[»] scaffold0314 (1 HSPs)
scaffold0314 (15-295)||(9807-10087)


Alignment Details
Target: scaffold0314 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 10087 - 9807
Alignment:
Q  15 attttcttctagtgattgctagtgttcttatttaatagaaggaatgcaaacaacatactattattgtttaaagattatgttacttgcatcttcttattaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10087 attttcttctagtgattgctagtgttcttatttaatagaaggaatgcaaacaacatactattattgtttaaagattatgttacttgcatcttcttattaa 9988  T
Q  115 aatgctttataagattcatgtcagcattgaaatatgaatgttattggattcgggtactggtggttttttaatagtagatgatgttggacaagnnnnnnng 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  9987 aatgctttataagattcatgtcagcattgaaatatgaatgttattggattcgggtactggtggttttttaatagtagatgatgttggacaagtttttttg 9888  T
Q  215 gaggcctgctcattcattgataaataggtgcataacacctattctaatggctgttctgtgtatgacaaacttgctgttctg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9887 gaggcctgctcattcattgataaataggtgcataacacctattctaatggctgttctgtgtatgacaaacttgctgttctg 9807  T

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