View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_40 (Length: 307)
Name: NF16056_high_40
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 27846733 - 27846524
Alignment:
| Q |
21 |
ccgagggcatatgatacaaataaataaagggatagatagttgactgagaaaagactacgtgggatacacaagagttagctagaatgaatttgtgatctca |
120 |
Q |
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| T |
27846733 |
ccgagggcatataatacaaataaataaagggatagatagttgactgagaaaagactacatgggatacacaagagttagctaggatgaatttgtgatctca |
27846634 |
T |
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| Q |
121 |
ctcacaccaatcataatcacctaaatccaatcaacctctacctaacaacatgggcatccatacttttcatccacacacaccttcttaatcttatgtatca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27846633 |
ctcacaccaatcataatcacctaaatccaatcaaccactacctaacaacatgggcatccatacttttcatccacacacaccttcttaatcttatgtatca |
27846534 |
T |
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| Q |
221 |
tctagcccta |
230 |
Q |
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|||||||||| |
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| T |
27846533 |
tctagcccta |
27846524 |
T |
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