View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_43 (Length: 295)
Name: NF16056_high_43
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 24287463 - 24287188
Alignment:
| Q |
15 |
tgtactttataggataatcaacaaaacaataatatcttgcaaaatcatatggtttaatcatctcaacgactcctttcatacaacaatttttcaacaatta |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
24287463 |
tgtacttcataggataatcaacaaaacaataatatctcgcaaaatcatatggtttaatcatctcaaagactcctttcatacaacaattttccaacaatta |
24287364 |
T |
|
| Q |
115 |
tattgttcta--aaaattttccactgtcaaaggaacctcttctaatttttggag---nnnnnnnnnncttcataagattaatgggttattttaattgaaa |
209 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
24287363 |
tattgttctaacaatattttccactgtcaaaggaacctcttctaatttttggagtttttttttttttcttcgtaagattaatgggttattttaattgaaa |
24287264 |
T |
|
| Q |
210 |
ctgaggtttatcttcaacaaagattaatgggtctttttcttt-nnnnnnnncgaaaaggttatcgggtctattctt |
284 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
24287263 |
ctgaggtttatcttcaacaaagattaatgggtgtttttctttaaaacaaaacgaaaaggttatcgggtctattctt |
24287188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 32993872 - 32993765
Alignment:
| Q |
15 |
tgtactttataggataatcaacaaaacaataatatcttgcaaaatcatatggtttaatcatctcaacgactcctttcatacaacaatttttcaacaatta |
114 |
Q |
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||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
32993872 |
tgtacttcataagataatcaacaaaacaataatatctcgcaaaatcatatggtttaatcatctcaaagactcctttcatacaacaattttccaacaatta |
32993773 |
T |
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| Q |
115 |
tattgttc |
122 |
Q |
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|||||||| |
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| T |
32993772 |
tattgttc |
32993765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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