View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16056_high_47 (Length: 254)

Name: NF16056_high_47
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16056_high_47
NF16056_high_47
[»] chr5 (5 HSPs)
chr5 (1-238)||(24887819-24888056)
chr5 (172-229)||(20448431-20448488)
chr5 (172-229)||(24937113-24937170)
chr5 (172-229)||(23604407-23604464)
chr5 (172-229)||(23714277-23714334)
[»] chr2 (2 HSPs)
chr2 (137-227)||(25591989-25592079)
chr2 (137-221)||(24370134-24370218)
[»] scaffold0014 (1 HSPs)
scaffold0014 (137-228)||(169493-169584)
[»] chr1 (5 HSPs)
chr1 (137-228)||(15300111-15300202)
chr1 (138-233)||(12715669-12715765)
chr1 (15-59)||(12715896-12715940)
chr1 (26-66)||(15299735-15299775)
chr1 (172-229)||(27043287-27043344)
[»] scaffold1184 (1 HSPs)
scaffold1184 (164-229)||(2426-2491)
[»] scaffold0026 (1 HSPs)
scaffold0026 (172-229)||(15187-15244)
[»] chr6 (4 HSPs)
chr6 (172-229)||(17816078-17816135)
chr6 (172-229)||(18191044-18191101)
chr6 (186-229)||(12659032-12659075)
chr6 (172-229)||(22070500-22070557)
[»] chr7 (6 HSPs)
chr7 (137-221)||(4464435-4464519)
chr7 (172-229)||(13318-13375)
chr7 (172-229)||(9579458-9579515)
chr7 (172-229)||(9727326-9727383)
chr7 (172-229)||(15296070-15296127)
chr7 (172-229)||(16153557-16153614)
[»] chr8 (4 HSPs)
chr8 (186-229)||(21857354-21857397)
chr8 (8-58)||(27933956-27934006)
chr8 (172-229)||(17617128-17617185)
chr8 (172-229)||(19998706-19998763)
[»] chr4 (4 HSPs)
chr4 (186-229)||(13623715-13623758)
chr4 (172-229)||(14689552-14689609)
chr4 (172-229)||(15351597-15351654)
chr4 (172-229)||(16641365-16641422)
[»] scaffold0301 (1 HSPs)
scaffold0301 (172-229)||(435-492)
[»] scaffold0168 (1 HSPs)
scaffold0168 (172-229)||(132-189)
[»] scaffold0123 (1 HSPs)
scaffold0123 (172-229)||(5174-5231)
[»] scaffold0053 (1 HSPs)
scaffold0053 (172-229)||(34475-34532)
[»] chr3 (5 HSPs)
chr3 (172-229)||(3248856-3248913)
chr3 (172-229)||(9364522-9364579)
chr3 (172-229)||(20557597-20557654)
chr3 (172-229)||(20584752-20584809)
chr3 (172-229)||(26173795-26173852)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 24887819 - 24888056
Alignment:
Q  1 tctcatagattttattcaaccaatccctgagattgaaaggttctttcatagaagaagaagagaagcgcacaataatcaaatggctgcaaatcgtaggctt 100  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  24887819 tctcatagattttgttcaaccaattcctgagattgaaaggttctttcatagaagaagaagagaagtgcacaataatcaattggctgcaaatcgtaggctt 24887918  T
Q  101 aaagagtatgttacgccttttacgacagatccccatatgggatcaactaaggcaagcattctatgcccgagtctttcccctaagcaaaactgctcaattg 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  24887919 aaatagtatgttacgccttttacgacagatccccatatgggatcaactaaggcaagcgttctatgcccgagtgtttcccctaagcaaaactgctcaattg 24888018  T
Q  201 aggaatcaaatcacacgattccctcaaaatgagattcc 238  Q
    |||||||||||||||||||||| |||||||||||||||    
T  24888019 aggaatcaaatcacacgattccttcaaaatgagattcc 24888056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 20448488 - 20448431
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||||| ||||||||||| |||| |||||||    
T  20448488 tctttccccatagtaaaactgctcaattgaggagtcaaatcacacaattcactcaaaa 20448431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 24937113 - 24937170
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||||| ||||||||||| |||| |||||||    
T  24937113 tctttccccatagtaaaactgctcaattgaggagtcaaatcacacaattcactcaaaa 24937170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 23604464 - 23604407
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  23604464 tctttccccgtagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 23604407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 23714334 - 23714277
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  23714334 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 23714277  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 25592079 - 25591989
Alignment:
Q  137 atgggatcaactaaggcaagcattctatgcccgagtctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaa 227  Q
    ||||||||| || ||||||||||||  ||||||| |||||||||  || |||||||||||||||||| |||| || ||||||||| |||||    
T  25592079 atgggatcagctgaggcaagcattccttgcccgattctttccccccagtaaaactgctcaattgagggatcatattacacgattcactcaa 25591989  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 24370218 - 24370134
Alignment:
Q  137 atgggatcaactaaggcaagcattctatgcccgagtctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattc 221  Q
    |||||| ||| | ||||||||||||  |||| || |||||||||     |||||||||||||||||| ||||||||||| |||||    
T  24370218 atgggaccaaatgaggcaagcattccttgcctgattctttcccccttctaaaactgctcaattgagggatcaaatcacatgattc 24370134  T

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Target: scaffold0014 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 169493 - 169584
Alignment:
Q  137 atgggatcaactaaggcaagcattctatgcccgagtctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaa 228  Q
    |||||| ||| | ||||||||||||  ||||||| ||||||||      |||||||||||||||||||||||||||||||||||| ||||||    
T  169493 atgggaccaaatgaggcaagcattccttgcccgattctttcccgcttctaaaactgctcaattgaggaatcaaatcacacgattcactcaaa 169584  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 15300111 - 15300202
Alignment:
Q  137 atgggatcaactaaggcaagcattctatgcccgagtctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaa 228  Q
    ||||||||| || |||||| |||||  ||||||| ||||| |||  || |||||||||||||||||| ||||||| ||||||||| ||||||    
T  15300111 atgggatcagctgaggcaaacattccttgcccgattcttttcccctagtaaaactgctcaattgagggatcaaataacacgattcactcaaa 15300202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 12715765 - 12715669
Alignment:
Q  138 tgggatcaactaaggcaagcattctatgcccgagtctttcccctaag-caaaactgctcaattgaggaatcaaatcacacgattccctcaaaatgag 233  Q
    ||||||||| ||| ||||||||| | | | ||| ||||||||| ||  |||||||||| |||||||||||||||||||  |||||  ||||||||||    
T  12715765 tgggatcaattaaagcaagcattttttactcgattctttcccccaaaacaaaactgctaaattgaggaatcaaatcacgggattcagtcaaaatgag 12715669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 12715940 - 12715896
Alignment:
Q  15 ttcaaccaatccctgagattgaaaggttctttcatagaagaagaa 59  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||    
T  12715940 ttcaaccaatacctgagactgaaaggttctttcatagatgaagaa 12715896  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 15299735 - 15299775
Alignment:
Q  26 cctgagattgaaaggttctttcatagaagaagaagagaagc 66  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  15299735 cctgagattgaaaggtactttcatataagaagaagagaagc 15299775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 27043287 - 27043344
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  27043287 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 27043344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 2491 - 2426
Alignment:
Q  164 tgcccgagtctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    ||||||| |||||||||   | |||||||||||||||||| ||||||||||||||||| |||||||    
T  2491 tgcccgattctttcccccttgtaaaactgctcaattgagggatcaaatcacacgattcactcaaaa 2426  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 15187 - 15244
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||||| ||||||||||| |||| |||||||    
T  15187 tctttccccatagtaaaactgctcaattgaggagtcaaatcacacaattcactcaaaa 15244  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 17816078 - 17816135
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||||| ||||||||||| |||| |||||||    
T  17816078 tctttccccatagtaaaactgctcaattgaggagtcaaatcacacaattcactcaaaa 17816135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 18191101 - 18191044
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||||| ||||||||||| |||| |||||||    
T  18191101 tctttccccatagtaaaactgctcaattgaggagtcaaatcacacaattcactcaaaa 18191044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 12659075 - 12659032
Alignment:
Q  186 aaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||    
T  12659075 aaaactgctcaattaagggatcaaatcacacgattcactcaaaa 12659032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 22070557 - 22070500
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||| | ||||||||||| |||| |||||||    
T  22070557 tctttccccatagtaaaactgctcaattgagaagtcaaatcacacaattcactcaaaa 22070500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 4464519 - 4464435
Alignment:
Q  137 atgggatcaactaaggcaagcattctatgcccgagtctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattc 221  Q
    |||||| ||| | ||||||||||||  ||||||| |||||||||  || |||| || ||| || |||||||||||||||||||||    
T  4464519 atgggaccaaatgaggcaagcattccttgcccgattctttccccatagtaaaattgttcagttaaggaatcaaatcacacgattc 4464435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 13375 - 13318
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  13375 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 13318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 9579458 - 9579515
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  9579458 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 9579515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 9727326 - 9727383
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  9727326 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 9727383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 15296127 - 15296070
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||| | ||||||||||| |||| |||||||    
T  15296127 tctttccccatagtaaaactgctcaattgagaagtcaaatcacacaattcactcaaaa 15296070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 16153614 - 16153557
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||| | ||||||||||| |||| |||||||    
T  16153614 tctttccccatagtaaaactgctcaattgagaagtcaaatcacacaattcactcaaaa 16153557  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 21857397 - 21857354
Alignment:
Q  186 aaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||    
T  21857397 aaaactgctcaattgaggagtcaaatcacacaattcactcaaaa 21857354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 27933956 - 27934006
Alignment:
Q  8 gattttattcaaccaatccctgagattgaaaggttctttcatagaagaaga 58  Q
    |||||| |||||||||| |||||||| ||||||||||| ||| ||||||||    
T  27933956 gattttgttcaaccaattcctgagatcgaaaggttcttgcattgaagaaga 27934006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 17617128 - 17617185
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||| | ||||||||||| |||| |||||||    
T  17617128 tctttccccatagtaaaactgctcaattgagaagtcaaatcacacaattcactcaaaa 17617185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 19998706 - 19998763
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  19998706 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 19998763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 13623715 - 13623758
Alignment:
Q  186 aaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||||||| |||||||||||||||| |||| |||||||    
T  13623715 aaaactgctcaattaaggaatcaaatcacacaattcactcaaaa 13623758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 14689609 - 14689552
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||| |||||||||||||| ||||||||||| |||| |||||||    
T  14689609 tctttccccatagtaaaattgctcaattgaggagtcaaatcacacaattcactcaaaa 14689552  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 15351654 - 15351597
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  15351654 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 15351597  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 16641422 - 16641365
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||| | ||||||||||| |||| |||||||    
T  16641422 tctttccccatagtaaaactgctcaattgagaagtcaaatcacacaattcactcaaaa 16641365  T

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Target: scaffold0301 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 492 - 435
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||| | ||||||||||| |||| |||||||    
T  492 tctttccccatagtaaaactgctcaattgagtagtcaaatcacacaattcactcaaaa 435  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 132 - 189
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||| | ||||||||||| |||| |||||||    
T  132 tctttccccatagtaaaactgctcaattgagaagtcaaatcacacaattcactcaaaa 189  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 5174 - 5231
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||||| |||||||||||  ||| |||||||    
T  5174 tctttccccatagtaaaactgctcaattgaggagtcaaatcacacagttcactcaaaa 5231  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 34475 - 34532
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  34475 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 34532  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 3248913 - 3248856
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||| ||||||||| ||||||||||| |||| |||||||    
T  3248913 tctttccccatagtaaaactgcttaattgaggagtcaaatcacacaattcactcaaaa 3248856  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 9364579 - 9364522
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  9364579 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 9364522  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 20557597 - 20557654
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  20557597 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 20557654  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 20584809 - 20584752
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || |||||||||||||| |||| ||||||||||| |||| |||||||    
T  20584809 tctttccccatagtaaaactgctcaattaaggagtcaaatcacacaattcactcaaaa 20584752  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 26173852 - 26173795
Alignment:
Q  172 tctttcccctaagcaaaactgctcaattgaggaatcaaatcacacgattccctcaaaa 229  Q
    |||||||||  || ||||||||||||||||| | ||||||||||| |||| |||||||    
T  26173852 tctttccccatagtaaaactgctcaattgagaagtcaaatcacacaattcactcaaaa 26173795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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