View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_5 (Length: 719)
Name: NF16056_high_5
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_5 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 111 - 703
Target Start/End: Complemental strand, 82750 - 82152
Alignment:
| Q |
111 |
atgtggccgttgattcaggcaggtaacgtgggccttgtacaacaaactgttagaagaaacaactgtattcctaaagataaccatcacattttagtgacta |
210 |
Q |
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| T |
82750 |
atgtggccattgattcaggcaggtaacgtgggcatc--acaacaaactgttagaagaaacaactgtattcctaaacataaccatcacattttattgacta |
82653 |
T |
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| Q |
211 |
catgggtagatatcttacaaagagatgagaaaaagggttatgaagtatgtgtga----tgtaattctccttctatctcggtaattctctagtccctccct |
306 |
Q |
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| T |
82652 |
catgggtagatatcttacaaagagatgagaaaaatggttatgaagtatgcgtgagtgatgtaattctccttctatctcactaattctctagtccctccct |
82553 |
T |
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| Q |
307 |
tatattattagtctgattcttactgcatttcttttatt----acctattattctctagcaacaaagattctagttaccaagttgtagtaatgcttctttg |
402 |
Q |
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| T |
82552 |
tatattattagtctgattcttactgcatttcttttatttattacctattattctctagcaacaaagattctagttaccaagttgttgtaatgcttctttg |
82453 |
T |
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| Q |
403 |
agtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatcagccctgctagagag |
502 |
Q |
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| T |
82452 |
agtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatcagccctgctagagag |
82353 |
T |
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| Q |
503 |
ctctctccatggtgcttgggactcaatgcaagaaactcatatacagtcatcgcacctcatttcttccatgcgtgaaacaaaccgacaatgtagcctgcgt |
602 |
Q |
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| T |
82352 |
ctctctccatggtgcttgggactcaatgcaagaaactccaatacagtcatcgcacctcatttcttccatggctgaaacaaaccgacaatgtagcctgcgt |
82253 |
T |
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| Q |
603 |
atggctgaatatgcatgagaaattagagagtcatgtgcacgaattctcaaactgttgcaagaggagattgatggttccccacggttcaggtgttggagga |
702 |
Q |
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| T |
82252 |
atggctgaatatgcatgagaaattagagagtcatgtgcacgaattctcaaactgttgcaagaggagattgatgattccccacggttcagctgttggagga |
82153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 389 - 681
Target Start/End: Original strand, 19152794 - 19153081
Alignment:
| Q |
389 |
gtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattgaatatatagaatcattatattgatgttttcattgtcaccatatca |
488 |
Q |
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| T |
19152794 |
gtaatgcttctttgatagaatcaataaaatctcattagcatttccatttcaacttagta----gaatcattatactggtgttttcagtgacaccatggca |
19152889 |
T |
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| Q |
489 |
gccctgctagagagctctctccatggtgcttgggactcaatgcaagaaactcatatacagtcatcgcacctcatttcttccatgcgtgaaacaaaccgac |
588 |
Q |
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| T |
19152890 |
tccctacttgagagctcttcccatggtgcgagaaactcaataaaagaaactccactacagtcatcacgtctcatttcttccatgacagaaacaacccggc |
19152989 |
T |
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| Q |
589 |
aatgtagcctgcgtatggctgaatatgcatgagaaattagagagtcatgtgcacgaattctcaaactgttgcaagaggagattgatggttccc |
681 |
Q |
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| T |
19152990 |
aatatagcatgcatatggct-aatatgcatgagaaattagagagtcgtgtgcacggattctgaaacagttgcaagaggagattgatgtttccc |
19153081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 361 - 444
Target Start/End: Original strand, 33117034 - 33117114
Alignment:
| Q |
361 |
caacaaagattctagttaccaagttgtagtaatgcttctttgagtgaatcaataaaatctcatttgcatttccatttcaattga |
444 |
Q |
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| T |
33117034 |
caacaaagattgtaattaccaagttgta---atgcttatttgagtgaatgaatgaaatctcatttacatttccattccaattga |
33117114 |
T |
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