View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_high_7 (Length: 665)
Name: NF16056_high_7
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 273 - 649
Target Start/End: Complemental strand, 12814084 - 12813708
Alignment:
| Q |
273 |
tcatatcttgtttgaaatcaattttaggtccagagactacccgtaagtttgagtcatgtgagcagcaatatcaaatcattgacgacaagtatgccatata |
372 |
Q |
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| T |
12814084 |
tcatatcttgtttgaaatcaattttaggtccagagactacccgtaagtttgagtcatgtgagcagcaatatcaaataattgacggtaagtatgccatata |
12813985 |
T |
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| Q |
373 |
aggagtatgaaaagtgcaattcaaaggattcgtaaaataaaataaagagaactgaaaatttgaggaatgttgtaatacatattagatttgcagagcatga |
472 |
Q |
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| T |
12813984 |
aggagtatgaaaagtgcaattcaaaggattcgtaaaataaaataaagagaactgaaaatttgaggaatgttgtaatacataatagatttgcagagcatga |
12813885 |
T |
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| Q |
473 |
ttagattataagtacctatcagtttctataaagagggcgttttgtttttcaacacgttctaaccatgcactatatatgacctttgtcaaaattttcttag |
572 |
Q |
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| T |
12813884 |
ttagattataagtacctatcagtttctataaagggggcgttttgtttttcaacacgttctaaccatgcactatatatgacctttgtcaaaattttcttag |
12813785 |
T |
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| Q |
573 |
aagaaggagtgagagggttaatatttcatgacattgatccnnnnnnntattttatgtttagaagatagggttaaaat |
649 |
Q |
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| T |
12813784 |
aagaaggagtgagagggttaatatttcatgacattgatccaaaaaaatattttatgtttagaagatagggttaaaat |
12813708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 12814438 - 12814176
Alignment:
| Q |
14 |
atgaatataatactttaactaataagagaaagtgaaaagagaatacacaaaagaaattatcattacaaaaaatatcatattcaaaatacttttccaaaat |
113 |
Q |
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| T |
12814438 |
atgaatataatactttaactaataagagaaagtcaaaagagaatacacataagaaattatcattacaaaaaatatcatattcaaaatacttttcccaaat |
12814339 |
T |
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| Q |
114 |
gttagtttctaaaagnnnnnnncatttctactgctaaacacatcatttatatgcaagaaaaactatttccaaaacatcatcttgattcttttcctacagt |
213 |
Q |
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| T |
12814338 |
gttagtttctaaaagaaaaaaacatttctactgctaaacacatcatttatatgcaagaaaaactatttccaaaacatcatcttgatttttttcctacaat |
12814239 |
T |
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| Q |
214 |
gttacatatgcaaaataattggtggtatatacttaagagtggaaaacaaagtgatgaagtcata |
277 |
Q |
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| T |
12814238 |
gttacatatgcaaagtaattggtgatatatactt-agagtggaaaacaaagtgatgatgtcata |
12814176 |
T |
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