View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_1 (Length: 992)
Name: NF16056_low_1
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 33910079 - 33909510
Alignment:
| Q |
1 |
aatataggggcagattgaaaaattataaaagcacttgcaaatgtgctccaacggtcttcctctaagagcattaacactgttttgccttaactcacaaggt |
100 |
Q |
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| T |
33910079 |
aatataggggcagattgaaaaattataaaagcacttgcaaatgtgctccaacggtcttcctctaagagcattaac----------------tcacaaggt |
33909996 |
T |
|
| Q |
101 |
ccgcaacatgtatttaatcaaaatcaaaagtttatcaatgccaccaaactaacaagtaacatatcgtaatattgctttaaagggttcaatcatgtgcaat |
200 |
Q |
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| T |
33909995 |
ccacaacatgtatttaatcaaaatcaaaagtttatcaatggcaccaaactaacaagtaacatatcgtaatattgctttaaagggtccaatcatgtgcaat |
33909896 |
T |
|
| Q |
201 |
ttttt-atgtcaatttgatgaaaagttgttcagcaaaacaattaattctgagttgccaat--catgtacaatcttttggacaatatatttgtagggttgg |
297 |
Q |
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||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |||||| |
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| T |
33909895 |
ttttttatgtgaatttgatgaaaagttgttcggcaaaacaattaattctgagttgccaatatcatgtgcaatctttcggacaatatatttgtaaggttgg |
33909796 |
T |
|
| Q |
298 |
gaatatatgaattgttatgnnnnnnnnnn-cttcaacttattataatgannnnnnngaaataactgattataatgatatgaacagttttttgagaggcat |
396 |
Q |
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| T |
33909795 |
gaatatacgaattgttatgtttttttttttcttcaactgattataatgatttttttgaaataactgattataatgatatgaacagttttttgagaggcat |
33909696 |
T |
|
| Q |
397 |
gatattgatatgattatgaactatgttttattttttaacctctgaagtcacaaaaattttataacatgatatctggaattgaaaattcctaatgttgtct |
496 |
Q |
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| T |
33909695 |
gatat------gattatgaactatgttttattttttaacctctgaagtcacaaaaattttataacatgatatctggaattgaaaattcctaatggtgtct |
33909602 |
T |
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| Q |
497 |
tttgaatcaggccaaactgacaaacatcgaccaggatatatgacagacttcttttcccttccaatctattttcctcagcaaagtaccaatct |
588 |
Q |
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| T |
33909601 |
tttgaatcaggccaaactgacaaacatcgaccaggatataggacagacttcttttcccttccaatctattttcctcagcaaagtaccaatct |
33909510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 583 - 973
Target Start/End: Complemental strand, 33909492 - 33909102
Alignment:
| Q |
583 |
caatctgaaatcttaaattccagatatcagattacaaaatcttaatatttgattgtcctcgaggctttttgtttatttctttggtagaaaagcgtagttc |
682 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33909492 |
caatttgaaatcttaaattccagatatcagattacaaaatcttaatctttgattgtcctcgaggctttttgtttatttctttggtaggaaagcgtagttt |
33909393 |
T |
|
| Q |
683 |
ggtaatcccgtagcctttgaaacattttagagcgacaatcaataatgatgttcttagcgaaatttcagttttgtctaagaggattgcgagttttgtgtaa |
782 |
Q |
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| T |
33909392 |
ggtaatcccgtagcctttgaaatattttagagcgacaatcaataataatgttcttagcgaaatttcagttttgtctaagaggattgcgagttttgtgtaa |
33909293 |
T |
|
| Q |
783 |
gaggattgcgggtcaacataaattcaaattttttaagaggattacaagagacgtttgtgtaaagtgacgagtctcaacgcattcatactattagtgcaca |
882 |
Q |
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| T |
33909292 |
gaggattgcgggtcaacataaattcaaattttttaacaggattacaagagacgtttgagtaaagtgacgagtctcaacgcattcatactattagtgcaca |
33909193 |
T |
|
| Q |
883 |
tcatggagaaagtgacattttaagtacatcttatatcatgacttcaattaggtggattatcaaccgattaataacgaaatttggagtgtgt |
973 |
Q |
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| T |
33909192 |
tcatggagaaagtgacattttaagtacatcttatatcatgacttcaattaggtggattatcaaccgattaataacgaaatttggagtgtgt |
33909102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 33924774 - 33924726
Alignment:
| Q |
432 |
taacctctgaagtcacaaaaattttataacatgatatctggaattgaaa |
480 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||| |||||| |
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| T |
33924774 |
taacctctgaagtcaccaaaattttataatatgatatctggagttgaaa |
33924726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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