View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_10 (Length: 630)
Name: NF16056_low_10
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 7 - 614
Target Start/End: Original strand, 47885290 - 47885897
Alignment:
| Q |
7 |
gcagcacagacaataggccccacaggactatcaatgtgaccttgaattcctattcccccaaccggtgcaccttgatcttgcaaatcaagaatctgttgtg |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885290 |
gcagcacaaacaataggccccacaggactatcaatgtgaccttgaattcctattcccccaaccggtgcaccttgatcttgcaaatcaagaatctgttgtg |
47885389 |
T |
|
| Q |
107 |
tgtatttttctggtgatgaattcatgtcgtctccatcttcaacatgataatcattcacaaatagggttgcagatggatctacctggtgtgcaatcttgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885390 |
tgtatttttctggtgatgaattcatgtcgtctccatcttcaacatgataatcattcacaaatagggttgcagatggatctacctggtgtgcaatcttgaa |
47885489 |
T |
|
| Q |
207 |
catgtttgcccttatatccttacctagtctgtcttgataaaatgaaccgtgcaacatttcattgttaacatcatagtgcttgaacttgcctttgtagcga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885490 |
catgtttgcccttatatccttacctagtctgtcttgataaaatgaaccatgcaacatttcattgttaacatcatagtgcttgaacttgcctttgtagcga |
47885589 |
T |
|
| Q |
307 |
gacaataagccagttaagcgattttggacagccgtcagtaaatcatttttattcagtgatttgacccattgttgaacattgctgtcgacttcccagaaga |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885590 |
gacaataagccagttaagcgattttggacagccgtcagtaaatcatttttattcagtgatttgacccattgttgaacattgctgtcgacttcccagaaga |
47885689 |
T |
|
| Q |
407 |
tacaatgtccacgaatgtctatcttgtacttctgacacaagtctaacatatcatcagcatccttatagttgaaattccctttctgtggctctgtccaaaa |
506 |
Q |
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| T |
47885690 |
tacaatgtccacgaatgtctatcttgtacttctgacacaagtccaacatatcatcagcatccttatagttgaaattccctttctgtggctctgtccaaaa |
47885789 |
T |
|
| Q |
507 |
ccacttcaactcattaccaaatacagcccagttaaaatgttgcacaaagaagtcaacaaaatcttcattgtcaatatttgttctattgatgcacgatcca |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47885790 |
ccacttcaactcattaccaaatacagcccagttaaaatgttgcacaaagaagtcaacaaaatcttcattgtcaatatttgttctattgatgcacgatcca |
47885889 |
T |
|
| Q |
607 |
attggaaa |
614 |
Q |
| |
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|||||||| |
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| T |
47885890 |
attggaaa |
47885897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 608
Target Start/End: Complemental strand, 4623790 - 4623198
Alignment:
| Q |
16 |
acaataggccccacaggactatcaatgtgaccttgaattcctattcccccaaccggtgcaccttgatcttgcaaatcaagaatctgttgtgtgtattttt |
115 |
Q |
| |
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|||| |||||| || |||||||| ||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| ||||||| | |
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| T |
4623790 |
acaacaggcccaactggactatctatgtgtccttgaattccaattccaccaacaggtgcaccttgttcttgcaaatcaagaatgtgttcaatgtatttat |
4623691 |
T |
|
| Q |
116 |
ctggtgatgaattcatgtcgtctccatcttcaacatgataatcattcacaaatagggttgcagatggatctacctggtgtgcaatcttgaacatgtttgc |
215 |
Q |
| |
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||| | || | | || ||||||||||| |||||||||||||||||| | || || || |||||| |||| |||| |||||||||||||||| |
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| T |
4623690 |
ttggacacgatcttgtatcacatccatcttcaatatgataatcattcacaaacaatgtagcggacagatctagttggtttgcagtcttgaacatgtttgc |
4623591 |
T |
|
| Q |
216 |
ccttatatccttacctagtctgtcttgataaaatgaaccgtgcaacatttcattgttaacatcatagtgcttgaacttgcctttgtagcgagacaataag |
315 |
Q |
| |
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||||||||| || |||| ||| ||||| ||||||||||| |||| |||||||||||||||||||||||| | ||||| ||||||||||||| | | |
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| T |
4623590 |
ccttatatctttgcctaatctatcttggtaaaatgaaccatgcagcatttcattgttaacatcatagtgactaaacttacctttgtagcgagttagaaga |
4623491 |
T |
|
| Q |
316 |
ccagttaagcgattttggacagccgtcagtaaatcatttttattcagtgatttgacccattgttgaacattgctgtcgacttcccagaagatacaatgtc |
415 |
Q |
| |
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| |||||||| ||||| || ||||||| | ||| ||||||||||| || ||||||||||||||||| | | || |||||||| ||||| || |||| |
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| T |
4623490 |
ctggttaagcggttttgaacggccgtcatcagatcgtttttattcagcgacttgacccattgttgaacggttccatccacttcccaaaagatgcagtgtc |
4623391 |
T |
|
| Q |
416 |
cacgaatgtctatcttgtacttctgacacaagtctaacatatcatcagcatccttatagttgaaattccctttctgtggctctgtccaaaaccacttcaa |
515 |
Q |
| |
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||||| | | ||||||||||||||||||||| ||| | ||||||||| || || || || |||||||||| |||||||| |||||| |||||||||| |
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| T |
4623390 |
cacgagtttggatcttgtacttctgacacaaggttaaaagatcatcagcgtctttgtaattcaaattcccttgttgtggctcagtccaataccacttcaa |
4623291 |
T |
|
| Q |
516 |
ctcattaccaaatacagcccagttaaaatgttgcacaaagaagtcaacaaaatcttcattgtcaatatttgttctattgatgcacgatccaat |
608 |
Q |
| |
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|||||| |||| ||||||||||| || |||| ||||| ||||| ||||||||||||||||| || |||| ||| ||||||| | |||||| |
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| T |
4623290 |
ctcatttgcaaacacagcccagttgaagtgtttcacaaggaagttgacaaaatcttcattgtcgatgtttgatctgctgatgcatgttccaat |
4623198 |
T |
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