View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16056_low_14 (Length: 534)

Name: NF16056_low_14
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16056_low_14
NF16056_low_14
[»] chr8 (12 HSPs)
chr8 (401-518)||(3270053-3270170)
chr8 (278-518)||(13806265-13806505)
chr8 (356-467)||(7167242-7167353)
chr8 (1-59)||(10284628-10284687)
chr8 (265-315)||(25059294-25059344)
chr8 (265-315)||(25093691-25093741)
chr8 (1-59)||(12831091-12831150)
chr8 (1-59)||(14547966-14548025)
chr8 (1-59)||(15197377-15197436)
chr8 (1-59)||(34012293-34012352)
chr8 (1-59)||(43414578-43414637)
chr8 (401-470)||(3361228-3361297)
[»] chr5 (6 HSPs)
chr5 (1-59)||(28177819-28177878)
chr5 (1-59)||(6679742-6679801)
chr5 (1-59)||(13811696-13811755)
chr5 (1-59)||(18520881-18520940)
chr5 (1-59)||(33149635-33149694)
chr5 (1-89)||(21370018-21370107)
[»] chr6 (3 HSPs)
chr6 (1-59)||(31976292-31976351)
chr6 (1-59)||(17598598-17598657)
chr6 (1-59)||(32869722-32869781)
[»] chr2 (8 HSPs)
chr2 (1-59)||(28381652-28381711)
chr2 (1-59)||(40613899-40613958)
chr2 (1-56)||(36168883-36168939)
chr2 (1-59)||(10249379-10249438)
chr2 (1-59)||(13438387-13438446)
chr2 (1-59)||(28863499-28863558)
chr2 (1-59)||(42257237-42257296)
chr2 (4-59)||(32505648-32505704)
[»] chr1 (8 HSPs)
chr1 (1-59)||(32813291-32813350)
chr1 (1-59)||(43176-43235)
chr1 (1-59)||(9474873-9474932)
chr1 (1-55)||(41758853-41758908)
chr1 (5-59)||(37649242-37649297)
chr1 (1-57)||(44548373-44548430)
chr1 (1-57)||(50630504-50630561)
chr1 (4-59)||(2581959-2582015)
[»] chr4 (8 HSPs)
chr4 (1-59)||(41823926-41823985)
chr4 (1-59)||(23608279-23608338)
chr4 (1-59)||(42044364-42044423)
chr4 (1-59)||(47104588-47104647)
chr4 (1-59)||(48183046-48183105)
chr4 (1-59)||(50052425-50052484)
chr4 (1-55)||(56300162-56300217)
chr4 (4-59)||(50526171-50526227)
[»] chr3 (7 HSPs)
chr3 (1-59)||(26141529-26141588)
chr3 (1-59)||(41189761-41189820)
chr3 (1-59)||(51419357-51419416)
chr3 (1-59)||(20764912-20764971)
chr3 (1-59)||(33644244-33644303)
chr3 (1-59)||(53982055-53982114)
chr3 (1-59)||(11095352-11095409)
[»] chr7 (5 HSPs)
chr7 (1-59)||(4999511-4999570)
chr7 (1-59)||(7389433-7389492)
chr7 (1-59)||(35137577-35137636)
chr7 (1-59)||(38267084-38267143)
chr7 (1-59)||(46033798-46033857)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 401 - 518
Target Start/End: Complemental strand, 3270170 - 3270053
Alignment:
Q  401 gagctgggaccagaactatttcgagcaatcgaacgttctcgtatttccatcattgttttctccaaaaactttcacacatctacttggtgtctcaaagagc 500  Q
    ||||||||||||||||| || |||||||| |||  |||||||||||| ||||||||||||||||||| || |  |||||||| ||||||||| |||||||    
T  3270170 gagctgggaccagaactgttgcgagcaatagaagtttctcgtatttctatcattgttttctccaaaagctatatcacatctagttggtgtcttaaagagc 3270071  T
Q  501 ttgaacacatcatgaaat 518  Q
    ||||||| || |||||||    
T  3270070 ttgaacaaattatgaaat 3270053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 278 - 518
Target Start/End: Original strand, 13806265 - 13806505
Alignment:
Q  278 tacgacgtgttcctcagcttcagaggcgaggacactcgtcgtaccttcgttgctcagcttcaccgcgac-ctctcaacagctggaatcaacacttacatc 376  Q
    ||||||||||||||||||||||| || || || ||||||||||  || |||||||| || ||  ||  | ||||| |  |||| ||||||||||||||||    
T  13806265 tacgacgtgttcctcagcttcaggggggaagatactcgtcgtaattttgttgctcatct-caatgcagcactctctaatgctgaaatcaacacttacatc 13806363  T
Q  377 gacaatctgcttcaaaaagggacagagctgggaccagaactatttcgagcaatcgaacgttctcgtatttccatcattgttttctccaaaaactttcaca 476  Q
    ||  ||| | |||||||||||||||| |||| ||| |||||||| ||||| || |||   ||||||||||||||| | || |||||| ||||||    |     
T  13806364 gatgatcggattcaaaaagggacagatctggaacccgaactattccgagccattgaagactctcgtatttccatcgtcgtcttctccgaaaactacgtcc 13806463  T
Q  477 catctacttggtgtctcaaagagcttgaacacatcatgaaat 518  Q
      |||| ||||||||| |||||||||||||| ||||||||||    
T  13806464 attctagttggtgtcttaaagagcttgaacaaatcatgaaat 13806505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 467
Target Start/End: Complemental strand, 7167353 - 7167242
Alignment:
Q  356 gctggaatcaacacttacatcgacaatctgcttcaaaaagggacagagctgggaccagaactatttcgagcaatcgaacgttctcgtatttccatcattg 455  Q
    |||||||||||||||||||| ||| | |  ||||| ||||| || |||||||||||||||||||| || ||||| ||| | |||| ||| || ||| | |    
T  7167353 gctggaatcaacacttacattgaccaacaacttcacaaaggaaccgagctgggaccagaactattacgggcaatagaagggtctcatatatctatcctcg 7167254  T
Q  456 ttttctccaaaa 467  Q
    ||||||||||||    
T  7167253 ttttctccaaaa 7167242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10284628 - 10284687
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||||||||||||||||||||    
T  10284628 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgt 10284687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 25059344 - 25059294
Alignment:
Q  265 tcctcaactgatctacgacgtgttcctcagcttcagaggcgaggacactcg 315  Q
    ||||||||  ||| ||||||| |||||||||||||||||||||||||||||    
T  25059344 tcctcaacaaatccacgacgttttcctcagcttcagaggcgaggacactcg 25059294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 25093741 - 25093691
Alignment:
Q  265 tcctcaactgatctacgacgtgttcctcagcttcagaggcgaggacactcg 315  Q
    ||||||||  ||| ||||||| |||||||||||||||||||||||||||||    
T  25093741 tcctcaacaaatccacgacgttttcctcagcttcagaggcgaggacactcg 25093691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12831150 - 12831091
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  12831150 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 12831091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14548025 - 14547966
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  14548025 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 14547966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15197436 - 15197377
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  15197436 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 15197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34012293 - 34012352
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| ||||||||  || | ||||| |||||||||||||||||||||||||    
T  34012293 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgt 34012352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 43414578 - 43414637
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| ||||||||  || |||||||||||||| | ||||||||||||||||    
T  43414578 aagagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgt 43414637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 3361228 - 3361297
Alignment:
Q  401 gagctgggaccagaactatttcgagcaatcgaacgttctcgtatttccatcattgttttctccaaaaact 470  Q
    ||||||||||||||| || ||||||||||  || ||||||  ||  ||||| ||||||||||||||||||    
T  3361228 gagctgggaccagaattaattcgagcaatacaaggttctcagatagccatcgttgttttctccaaaaact 3361297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28177878 - 28177819
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||    
T  28177878 aagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgt 28177819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6679801 - 6679742
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||||||||    
T  6679801 aagagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgt 6679742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13811755 - 13811696
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  13811755 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 13811696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18520881 - 18520940
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  18520881 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 18520940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33149635 - 33149694
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| ||||||||  || | ||||| |||||||||||||||||||||||||    
T  33149635 aagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgt 33149694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21370107 - 21370018
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagt-catgtgaccacgtgtcaaatttttgtgtgggtgtgtattgcca--taagcatgtctatgtatcata 89  Q
    |||||||| ||||||||||||| || || |||||||| ||||| ||||||| ||||  ||||||| |||  |||| ||||||||||||||||    
T  21370107 aagagaaaatgtgtttgtgcggggtccacgtgaccacatgtcagatttttgagtgg--gtgtattaccacctaaggatgtctatgtatcata 21370018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31976351 - 31976292
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagt-catgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||    
T  31976351 aagagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgt 31976292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17598657 - 17598598
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  17598657 aagagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgt 17598598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32869781 - 32869722
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  32869781 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 32869722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28381652 - 28381711
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||    
T  28381652 aagagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgt 28381711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40613899 - 40613958
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| ||||| |||||||||| ||||||||||||||||    
T  40613899 aagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgt 40613958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36168939 - 36168883
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtggg 56  Q
    |||||||||| || |||||||| ||| ||||| ||||||||||||||||||||||||    
T  36168939 aagagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtggg 36168883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10249379 - 10249438
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  10249379 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 10249438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13438446 - 13438387
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  13438446 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 13438387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28863558 - 28863499
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  28863558 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 28863499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42257296 - 42257237
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagt-catgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| || |||||| |||||||||| |||||| |||||||||    
T  42257296 aagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgt 42257237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 32505648 - 32505704
Alignment:
Q  4 agaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 32505704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 32813350 - 32813291
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||    
T  32813350 aagagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgt 32813291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 43235 - 43176
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||||||| | ||||| |||||||| ||||||||||||||||    
T  43235 aagagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgt 43176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9474873 - 9474932
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||||||||||||||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  9474873 aagagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 9474932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41758908 - 41758853
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgg 55  Q
    |||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||    
T  41758908 aagagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtgg 41758853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 37649297 - 37649242
Alignment:
Q  5 gaaagtgtgtttgtgcggagt-catgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||| ||||||||| | || |||||||||||||| ||||||||||||||||    
T  37649297 gaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgt 37649242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44548373 - 44548430
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggt 57  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||    
T  44548373 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 44548430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 50630561 - 50630504
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggt 57  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||    
T  50630561 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 50630504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 2582015 - 2581959
Alignment:
Q  4 agaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 2581959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 41823985 - 41823926
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| ||||||| |||||||| ||||||||||||||||    
T  41823985 aagagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgt 41823926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23608338 - 23608279
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagt-catgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| ||||| ||||| || ||||| |||||||| ||||||||||||||||    
T  23608338 aagagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgt 23608279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42044364 - 42044423
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  42044364 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 42044423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 47104647 - 47104588
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtca-tgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||||||||| || |||| |   ||||||||||||||||||||||||||||    
T  47104647 aagagaaagtgtgtttgtgtggggtcaataaaaccacgtgtcaaatttttgtgtgggtgt 47104588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 48183046 - 48183105
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  48183046 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 48183105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 50052425 - 50052484
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  50052425 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 50052484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 56300162 - 56300217
Alignment:
Q  1 aagagaaagtgtgtttgtgc-ggagtcatgtgaccacgtgtcaaatttttgtgtgg 55  Q
    |||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||||||    
T  56300162 aagagaaagtgtgtttgtgcaggattcatatgaccacatgtcagatttttgtgtgg 56300217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 50526171 - 50526227
Alignment:
Q  4 agaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||| ||| ||||||||| || | |||||||||||||| ||||||||||||||||    
T  50526171 agaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgt 50526227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26141529 - 26141588
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| ||||| || ||| |||||||||||||||| ||||||||||||||||    
T  26141529 aagagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgt 26141588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41189761 - 41189820
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| ||||| ||||||||||||||||| |||||||||    
T  41189761 aagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgt 41189820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51419357 - 51419416
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| ||||| |||||||||| ||||||||||||||||    
T  51419357 aagagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgt 51419416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 20764912 - 20764971
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||| ||| ||| ||||| |||||||||| ||||||||||||||||    
T  20764912 aagagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgt 20764971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33644303 - 33644244
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  33644303 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 33644244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 53982114 - 53982055
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  53982114 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 53982055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11095352 - 11095409
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtcatgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||||||||||||| ||||| || | ||||| |||||||| ||||||||||||||||    
T  11095352 aagagaaagtgtgtttatgcggggt-acgtgactacgtgtcagatttttgtgtgggtgt 11095409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4999511 - 4999570
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagt-catgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||||||||||||||||||| || || ||||| |||| ||| ||||||||||||||||    
T  4999511 aagagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgt 4999570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 7389492 - 7389433
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  7389492 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 7389433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35137636 - 35137577
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagt-catgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||||||||||||||||||| || || ||||| |||||| | ||||||||||||||||    
T  35137636 aagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgt 35137577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38267143 - 38267084
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagtc-atgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    ||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||||||||    
T  38267143 aagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 38267084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46033798 - 46033857
Alignment:
Q  1 aagagaaagtgtgtttgtgcggagt-catgtgaccacgtgtcaaatttttgtgtgggtgt 59  Q
    |||||||| | || ||||||||||| ||||||||||||||||| |||||| |||||||||    
T  46033798 aagagaaaatatgcttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgt 46033857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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