View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_15 (Length: 530)
Name: NF16056_low_15
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Original strand, 5800364 - 5800868
Alignment:
| Q |
12 |
tgagatgaaccattcaagaatattcttccaggaactctatgcaaccccatttccacaccggaatcacgtttatgtgtataggatgaaaatgaaggagatt |
111 |
Q |
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| T |
5800364 |
tgagatgaaccattcaagaatattcttccaggaactctatgcaaccccatttccacgcccgaatcacgtttatgtgtataggatgaaaatgaaggagatt |
5800463 |
T |
|
| Q |
112 |
cataataataatttgtatcagtagaaggagctaaagaagctcctgagatgcacaatcccatcgatcccgacacgacaatgaacacaacaataacacacac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800464 |
cataataataatttgtatcagtagaaggagctaaagaagctcctgagatgcacaatcccatcgatcccgacacgacaatgaacacaacaataacacacac |
5800563 |
T |
|
| Q |
212 |
aactcaattcaaatcaatgacattttttcatatggataatga-nnnnnnnaaagattttcatacggataatgataaggtataatattttccagaaatagt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800564 |
aactcaattcaaatcaatgacattttttcatatggataatgattttttttaaagattttcatacggataatgataaggtataatattttccagaaatagt |
5800663 |
T |
|
| Q |
311 |
aacaacaataaccgtctatcaaaaatagcnnnnnnnttcaactgaatatatgatatggatatatttttaatttgataagaagttaagcatatatgattgc |
410 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5800664 |
aacaacaataaccgtctatcaaaaatagcaaaaaaattcaactgaatatatgatatggatatatttttaatttgataagaagttaagcatatgtgattgc |
5800763 |
T |
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| Q |
411 |
acaagtggcacttcacatacactacatcacacaccaaacaaagagatagagaaaggaattcgtcaaaaactttcagttgtttttgtttacaaccaatggt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800764 |
acaagtggcacttcacatacactacatcacacaccaaacaaagagatagagaaaggaattcgtcaaaaactttcagttgtttttgtttacaaccaatggt |
5800863 |
T |
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| Q |
511 |
taatt |
515 |
Q |
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| T |
5800864 |
taatt |
5800868 |
T |
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