View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_18 (Length: 475)
Name: NF16056_low_18
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 101 - 466
Target Start/End: Original strand, 42743787 - 42744151
Alignment:
| Q |
101 |
tttagggatgtaattactttcttccaaacgaaaatgataaccaccttgcgacattgtaatactttttatttgaaagaatgaatacaggagatacatgtct |
200 |
Q |
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| T |
42743787 |
tttagggatgtaattactttcttccaaacgaaaatgataaccaccttgcgacattgtaatactttttatttgaaagaatgaatacaggagatacatgtct |
42743886 |
T |
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| Q |
201 |
c--tctcttaattattgcttcccattctatgatgtgttggaaaatgtgttcaaaacttatttatctgagttagtttgattcaatgttaattatcaaagat |
298 |
Q |
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| T |
42743887 |
ctctctcttaattattgcttccctttctatgatgtgttggaaaatgtgttcaaaacttatttgtctgagttagtttgattcaatgttaattatcaaagat |
42743986 |
T |
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| Q |
299 |
atatatgtggattttcctagtaattaaagaacactttggtgatgcattcta-gaataaaatgaagtgcaacccagctgctgccacccttctatttgctgt |
397 |
Q |
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| T |
42743987 |
atatatgtggcttttcctag----taaagaacactttgatgatgcattctatgaaaaaaataaagtgcaatccagctgctgccacccttctctttgctgt |
42744082 |
T |
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| Q |
398 |
gtaagccatttccgttgttgcttgagctcggtcattgtccccatttctgctacgatcttcctcctttgc |
466 |
Q |
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| T |
42744083 |
ctaagtcatttccgttgttgcttgagctcggtcattgtccccatttctgctacgatcttcctcctttgc |
42744151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 42743687 - 42743734
Alignment:
| Q |
18 |
gttagatgatattaagctctgatatattggattgttttatacacaagc |
65 |
Q |
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| T |
42743687 |
gttagatgatattaagctctgatatattggattgttttatacacaagc |
42743734 |
T |
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