View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_2 (Length: 893)
Name: NF16056_low_2
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 32144456 - 32145035
Alignment:
| Q |
1 |
tgattcttaagtaatgtgagacttttttatgtatcgaaacaaaatcttattattcagccattaccattaatagtggtattaaaataccgctggtctaaaa |
100 |
Q |
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| T |
32144456 |
tgattcttatgtaatgtgagacttttttatgtaccgaaacaaaatcttattattcagccattaccattaccagtggtactaaaataccgctagtctaaaa |
32144555 |
T |
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| Q |
101 |
taaattatcttgtgaacccactatctcggtacatattacggtcacacttttagaccatttggatcgcgtagagaattattttaaatttttgaagtatata |
200 |
Q |
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| T |
32144556 |
taaattatcttgtggacccattatctcggtacacattacggtcacactttcagatcatttggatcgcgtagagaattattttaaatttttaaagtatata |
32144655 |
T |
|
| Q |
201 |
gtgtaatattttgatgatcaactttattcttaatgcctttnnnnnnn-ctttatgtttaatgcttattacaacataaattttgnnnnnnnnnatcctcca |
299 |
Q |
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| T |
32144656 |
gtgtaatattttgatgatcaactttattcttaatgcctttaaaaaaaactttatgtttaatgcttattacaacataa-ttttatttttttttatcctcca |
32144754 |
T |
|
| Q |
300 |
ccctnnnnnnnnttgtatttatatattatagattatttggtccacccgaacnnnnnnnnnnctatctaactctcccactaaccattacattgctaactat |
399 |
Q |
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| T |
32144755 |
ccctaaaaaaaattgtatttatatattatagattatttagtccacccgaacttttttttt-ctatctaactctcccactaaccattacagtgctaactat |
32144853 |
T |
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| Q |
400 |
gtaaagacaaattgtgtgttatttctctagagaagcatgttaagtcgcaatttattgttttcggtgaagacaaattttgccctcgtttcatgtcatgtta |
499 |
Q |
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| T |
32144854 |
gtaaagacaaattgtgtgttatttctctagagaagcatgttaagtcacaatttattgttttcggtgaagacaaattttgccctcgtttcatgtcatgtt- |
32144952 |
T |
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| Q |
500 |
aaaactaaatttcatcgtaacaatttttaaacaaactagtcaagtattcattcactatcaatttgaaagttaaaattgaactt |
582 |
Q |
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| T |
32144953 |
aaaactaaatttcatcgtaacaatttttaaacaaactagtcaagtattcattcactatcaatttgaaagttaaaattgaactt |
32145035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 599 - 787
Target Start/End: Original strand, 32146147 - 32146338
Alignment:
| Q |
599 |
tatcttaattttggcattattttgcatattattgattttggtcttaatcaagattgttat---tattatattgtatgctatttgtttatgccagaagaca |
695 |
Q |
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| T |
32146147 |
tatcttaattttggcattattttgcatattattgattttggtcttaaacaagattgttattattattatattgtatgctatttgtttatgccagaagaca |
32146246 |
T |
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| Q |
696 |
attttaatgatagttcacattgtatcctaaagtttttgttgtttataacttatcattcttaacctttgtttttgttcttctcaaacattacg |
787 |
Q |
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| T |
32146247 |
attttaatgatagtttacattgtatcctaaagtttttgttgtttataacttatcattcttaacctttgtttttgttcttctcaaacattacg |
32146338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 795 - 836
Target Start/End: Original strand, 32146590 - 32146631
Alignment:
| Q |
795 |
ttgatagaatcaatttactactatcaagtgtttctattagtt |
836 |
Q |
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| T |
32146590 |
ttgatagaatcaatttactactatcaagtgtttctattagtt |
32146631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 51810290 - 51810257
Alignment:
| Q |
248 |
ctttatgtttaatgcttattacaacataaatttt |
281 |
Q |
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| T |
51810290 |
ctttatgtttaatgcttattataacataaatttt |
51810257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 4672308 - 4672271
Alignment:
| Q |
4 |
ttcttaagtaatgtgagacttttttatgtatcgaaaca |
41 |
Q |
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| T |
4672308 |
ttctttagcaatgtgagacttttttatgtatcgaaaca |
4672271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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