View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_21 (Length: 452)
Name: NF16056_low_21
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 33 - 441
Target Start/End: Original strand, 18542642 - 18543049
Alignment:
| Q |
33 |
gaagtaaggctgggtatatactgttaaattgtgtattcaaaattatttatattccaactttcccatagttgtattattttatttggtttgaactacgaag |
132 |
Q |
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| T |
18542642 |
gaagtaaggctgggtatatactgtgaaattgtgtattcaaaattatttatattccaactttcccatagttgtattattttatttggtttgaactacgaag |
18542741 |
T |
|
| Q |
133 |
gttacaagatatggcaacaatgaaggtggaaaacttagtcctcaagaagagaaaacaataaaagcaatcgctgatgcaaggtaaatatgcaaatttgata |
232 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18542742 |
gttacaagatatggcaacaatgaaggtgggaaacttagtcctcaagaagagaaaacaataaaagcaatcgctgatgcaaggtaaatatgcaaaattgata |
18542841 |
T |
|
| Q |
233 |
attataagtaaccttaaatgctcatcaagatcatttgcagtaaaatgaatccgctctaggnnnnnnnggaattatcaacaaaaatggaagttagcattag |
332 |
Q |
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| T |
18542842 |
attataagcaaccttaaatgctcatcaagatcatttgcagtaaaatgaatccgctctaggaaaaaaaggaattatcaacaaaaatggaagttagcattag |
18542941 |
T |
|
| Q |
333 |
ctataaataacgataacagaagtatcgttaactataaaaaacgaaccaacaccaaccgcttaatcaaatattaattttctgttttatactttttgtgctt |
432 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
18542942 |
ctataaataacgataacagaagtatcgttaactat-aaaaacgaaccagcgccaactgcttaatcaaacattaattatctgttttatactttttgtgctt |
18543040 |
T |
|
| Q |
433 |
tcagttcat |
441 |
Q |
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| T |
18543041 |
tcagttcat |
18543049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 27013106 - 27013158
Alignment:
| Q |
164 |
aacttagtcctcaagaagagaaaacaataaaagcaatcgctgatgcaaggtaa |
216 |
Q |
| |
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|||| |||||||||||||||||||| || |||||||| ||||||||||||||| |
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|
| T |
27013106 |
aactcagtcctcaagaagagaaaacgatcaaagcaattgctgatgcaaggtaa |
27013158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 27064570 - 27064621
Alignment:
| Q |
164 |
aacttagtcctcaagaagagaaaacaataaaagcaatcgctgatgcaaggta |
215 |
Q |
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|||| |||||||||||||||||||| || |||||||| |||||||||||||| |
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| T |
27064570 |
aactcagtcctcaagaagagaaaacgatcaaagcaattgctgatgcaaggta |
27064621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 27032266 - 27032215
Alignment:
| Q |
164 |
aacttagtcctcaagaagagaaaacaataaaagcaatcgctgatgcaaggta |
215 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||||||| |||||||||||||| |
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|
| T |
27032266 |
aactcagtcctcaagaaaggaaaacaatcaaagcaattgctgatgcaaggta |
27032215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 26995740 - 26995694
Alignment:
| Q |
169 |
agtcctcaagaagagaaaacaataaaagcaatcgctgatgcaaggta |
215 |
Q |
| |
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|||||||||||| |||| ||||| |||||||| |||||||||||||| |
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|
| T |
26995740 |
agtcctcaagaaaagaagacaatcaaagcaattgctgatgcaaggta |
26995694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 34720213 - 34720264
Alignment:
| Q |
164 |
aacttagtcctcaagaagagaaaacaataaaagcaatcgctgatgcaaggta |
215 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||| |||||||||||||| |
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|
| T |
34720213 |
aactcagtcctcaagaagagaaaactatcaaagcaattgctgatgcaaggta |
34720264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 34698078 - 34698032
Alignment:
| Q |
169 |
agtcctcaagaagagaaaacaataaaagcaatcgctgatgcaaggta |
215 |
Q |
| |
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|||||||||||| |||| ||||| |||||||| |||||||||||||| |
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| T |
34698078 |
agtcctcaagaaaagaagacaatcaaagcaattgctgatgcaaggta |
34698032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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