View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_22 (Length: 449)
Name: NF16056_low_22
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 21 - 440
Target Start/End: Complemental strand, 34276041 - 34275637
Alignment:
| Q |
21 |
atcagtgcattcaagcacaggtacagcttcaccaaagttttcagttgaatcttcatttagctcttctgtaatcatgcgaaaagagcatatnnnnnnnttg |
120 |
Q |
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| T |
34276041 |
atcagtgcattcaagcacaggtacagcttcaccaaagttttcagttgaatcttcatttagctcttctgtaatcatgcgaaaagagcatataaaaaaattg |
34275942 |
T |
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| Q |
121 |
tcgtcactaatgagtaagagataaattacacacaaaccagtaacataatgcagttaaatgaaacatttttcctcttcaacataatttctaacctgaattg |
220 |
Q |
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| T |
34275941 |
tcgtcactaatgagtaagagataaattacacacaaaccagtaacataatgcagttaaatg---------------tcaacataatttctaacctgaattg |
34275857 |
T |
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| Q |
221 |
tcagattcttcatccgaagagccatcagcatcagatttcttattctctaaagtagggacaagcattggtaaacaataaggaaatgatatgcaaataagct |
320 |
Q |
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| T |
34275856 |
tcagattcttcatccgaagagccatcagcatcagatttcttattctctaaagtagggacaagcattggtaaacaataaggaaatgatatgcaaataagct |
34275757 |
T |
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| Q |
321 |
gctataaagataaatgaatgcnnnnnnnggtttttaccaagatatgagaaaagaggatggtgttttgtatatgttgctacatcagttgtgtcctcgattt |
420 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34275756 |
gctataaagataaatgaatgcaaaaaaaggtttttaccaagatatgagaaaagaggatggtgttttgtatatgttgctacatcagttgtgtcctcgattt |
34275657 |
T |
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| Q |
421 |
tctttcttcttcatctcact |
440 |
Q |
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| T |
34275656 |
tctttcttcttcttctcact |
34275637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 34283116 - 34283050
Alignment:
| Q |
208 |
ctaacctgaattgtcagattcttcatccgaagagccatcagcatcagatttcttattctctaaagta |
274 |
Q |
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|||||| | ||||||| | || |||||| ||||||||||||||||||| ||||||||||||| |||| |
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| T |
34283116 |
ctaacccggattgtcaaaatcatcatccaaagagccatcagcatcagacttcttattctctacagta |
34283050 |
T |
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