View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_23 (Length: 448)
Name: NF16056_low_23
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 37208891 - 37209303
Alignment:
| Q |
18 |
agatcctgaaatgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttatggttaataaa |
117 |
Q |
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| T |
37208891 |
agatcctgaaatgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttatggttaataaa |
37208990 |
T |
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| Q |
118 |
caacctgtgcatgtgttttgggatgtgtatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcccactgaagttg |
217 |
Q |
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| T |
37208991 |
caacctgtgcatgtgttttgggatgtatatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcccactgaagttg |
37209090 |
T |
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| Q |
218 |
agagtgataaagaagagaaaggtttagaaggtgagagtgatgatggtagtgctactagtggatattattcaacaaaaagttatactccttttgagtcttg |
317 |
Q |
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| T |
37209091 |
agagtgataaagaagagaaaggtttagaaggtgagagtgatgatggtagtgctactagtggatattattcaacaaaaagttatactccttttgagtcttg |
37209190 |
T |
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| Q |
318 |
ccttgtactctgtgcctataaacttgagtgataagttataagtcagagagaagagaccaaatgtttatatgatagtcggggcaaccatgcttttaaattg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37209191 |
ccttgtactctgtgcctataaacttgagtgataagttataagtcagagagaagagaccaaatgtttatatgatagtcggggcaaccatgcttttaaattg |
37209290 |
T |
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| Q |
418 |
cggttgcggctat |
430 |
Q |
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| T |
37209291 |
cggttgcggctat |
37209303 |
T |
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Back To:
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Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 29503814 - 29504001
Alignment:
| Q |
19 |
gatcctgaaatgtggattagtattgatgggattgttttgattcatattaagaatttgcagtggaagtttagagggaaccaaactgttatggttaataaac |
118 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
29503814 |
gatcctgaaatgtggattagcattgatggaattgttttgattcatgttaagaatttgcagtggaaatttagagggaatcaaactgttatggttaataaac |
29503913 |
T |
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| Q |
119 |
aacctgtgcatgtgttttgggatgtgtatgattggttgtttagtgtgtctgggtctggtcctgggctttttatcttcaaacctgggcc |
206 |
Q |
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| T |
29503914 |
aacctgtgcaagttttttgggatgttcatgattggttgtttagtggttctggttcaggacctggacttttcatttttaaaccagggcc |
29504001 |
T |
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