View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_26 (Length: 428)
Name: NF16056_low_26
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 179 - 411
Target Start/End: Original strand, 6361085 - 6361316
Alignment:
| Q |
179 |
atctgcttgcaagtgtgctaacattaatattgtgagctagctgcagtgtgctatgatatcattgaagtgtgcaggtgctaacttaagtgtgaatatctgt |
278 |
Q |
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| T |
6361085 |
atctgcttgcaagtgtgctaacattaatattgtgagctagctgcagtgtgctatgatatcattgaagtgtgcaggtgctaact-aagtgtaaatatctgt |
6361183 |
T |
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| Q |
279 |
acattaattacaaataatatttgttaggattatccaatatatcaagtagaacctctccatacatgctgttacttggtataactccaaatcgttgcatcga |
378 |
Q |
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| T |
6361184 |
acattaattacaaataatatttgttaggattatccaatatatcaagtagaacctctacatacatgttgttacttggtataactccaaattgttgcatcga |
6361283 |
T |
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| Q |
379 |
aggcacatggaaacaatgaagtgtatagttcat |
411 |
Q |
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| T |
6361284 |
aggcacatggaaacaatgaagtgtatagttcat |
6361316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 6360882 - 6361059
Alignment:
| Q |
1 |
agccactggatcaaaattgctgcaaaaacctatgcggctgagaccatataacaggaacaatatttcaggtttgagcgaattgtattgctaaacatacggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
6360882 |
agccactggatcaaaattgctgcaaaaacctatgcggctgagaccatataacaggaacaatatttcaggtttgaacgaattgtattgctaaacataaggt |
6360981 |
T |
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| Q |
101 |
tacatatattctgccttccaatactataatcatggagatatcttacctactctagctgcaagtgagttggccgtgagt |
178 |
Q |
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| T |
6360982 |
tacatatattctgccttccaatactataatcatggagatatcttacctactctagctgcaagtgagttggccgtgagt |
6361059 |
T |
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