View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_27 (Length: 420)
Name: NF16056_low_27
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 19269907 - 19269507
Alignment:
| Q |
12 |
gaatataaaatagaattcagttattttctttccatttttgtcctcacaatttaacgttaattacgaactcaccctacacaaaatagaaagttgaaagcac |
111 |
Q |
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| T |
19269907 |
gaatataaaatagaattcagttattttctttccattttcgtcctcacaatttcacgttaattacgaactcaccccacacaaaatagaaagttgaaagcag |
19269808 |
T |
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| Q |
112 |
tgtaagaaaaagttcatcaactcacggtgtttccggcggtttctcattggagacggtggatttctccggcagatcctcgct-gagcttgaagaaattgat |
210 |
Q |
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| T |
19269807 |
tgtaaggaaaagttcatcaactcacggtgtttccggcggtttctcatcggagacggtggatttctccggcagatcctcgctggagcttgaagaaattgat |
19269708 |
T |
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| Q |
211 |
tgattatttgacctgtaagacgacgctgaagcc------gatgccgtttcaatggaaccggtttgaaccggttgcaacagtttgtcgtcggtggtttccg |
304 |
Q |
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| T |
19269707 |
tgattatttgacctgtaagacgacgctgacgccgacactgatgccgtttcgatagaaccggtttgaacccgttgcaacagtttgtcatcggtggtttccg |
19269608 |
T |
|
| Q |
305 |
gtacaagattccagccgatgtggccgaacctatcaccggaatcatcgacgccgagattccagtttgagttgccgacaaactcttcggtaggtgctctgtc |
404 |
Q |
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| T |
19269607 |
gtacaagattccagccgatgtggccgaacctatcaccggaatcatcgacgccgagattccagtttgagttgccgacaaactcttcggtaggtgctctgtc |
19269508 |
T |
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| Q |
405 |
t |
405 |
Q |
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| T |
19269507 |
t |
19269507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 19273622 - 19273546
Alignment:
| Q |
24 |
gaattcagttattttctttccatttttgtcctcacaatttaacgttaattacgaactcaccctacacaaaatagaaa |
100 |
Q |
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|||||| |||||||||||| |||||| ||||||||||||| | ||||||||||||||||||| ||| |||| ||||| |
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| T |
19273622 |
gaattctgttattttcttttcattttcgtcctcacaatttcatgttaattacgaactcaccccacagaaaacagaaa |
19273546 |
T |
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