View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_28 (Length: 411)
Name: NF16056_low_28
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 41 - 391
Target Start/End: Original strand, 9374870 - 9375220
Alignment:
| Q |
41 |
tgtgtcgagagtagctcacaactgcctaccaaagcgtgcaaaggctgattaagaaagggtccaaatagaagccaactttccatggtatatataacgaaga |
140 |
Q |
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| T |
9374870 |
tgtgtcgagagtagctcacaactgcctaccaaagcgtgcaaaggctgattaagaaagggtccaaatagaagccaactttccatggtatatataacgaaga |
9374969 |
T |
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| Q |
141 |
ggccaaggcagctgatgatattctgctatgttgcaggaagatcagggaaacatggagaaaattgtggctgccgcattatgttgatcagacccaactgcaa |
240 |
Q |
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| T |
9374970 |
ggccaaggcagctgatgatattctgctatgttgcaggaagatcagggaaacatggagaaaattgtggctgccgcattatgttgatcagacccaactgcaa |
9375069 |
T |
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| Q |
241 |
aatcgatactttggaggaatggttttctatgtactaagagcactacctaagaatgataagtgtatgtttgccatgaacctttggagtttgtggaggagaa |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9375070 |
aatcgatactttggaggaatggttttctatgtactaagagcactacctaagaatgataagtgtatgtttgccatgaacctttggagtttgtggaggagaa |
9375169 |
T |
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| Q |
341 |
gaaacacggaaatttgggacaatcaaaggtaaaggacatattgtttgttga |
391 |
Q |
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| T |
9375170 |
gaaacacggaaatttgggacaatcaaaggtaaaggacatattgtttgttga |
9375220 |
T |
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