View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_29 (Length: 401)
Name: NF16056_low_29
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 38569787 - 38569427
Alignment:
| Q |
17 |
atgaacctgggtttggacaaagactttatgagaatgtctgcaggttgatctttggtagaaatgtgagacatacagagttgacccaattgaacaagttgac |
116 |
Q |
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| T |
38569787 |
atgaacctgggtttggacaaagactttatgagaatgtctgcaggttgatctttggtagaaatgtgagacatacagagttgacccaattgaacaagttgac |
38569688 |
T |
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| Q |
117 |
gtacataatggtagtcaagtgtgatatgcttcatttgagagtgaaaaactagattagagcataagtaggtgctctgatgttgtcacagaacagatgagga |
216 |
Q |
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| T |
38569687 |
gtacataatggtagtcaagtgcgatatgcttcattcgagagtgaaaaactggattagagcataagtaggtgctctgatgttgtcacagaacagatgagga |
38569588 |
T |
|
| Q |
217 |
gctggtgttttgacatgtaatccactgagaaggtttgtcaaccacatgacctctactgtagcatttgctactgaacgatattcagcttccggtgatgatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
38569587 |
gctggtgttttgacatgtaatccactgagaaggtttgtcaaccacatgacctctgctgcagcatttgctactgaatgatattcagcttccggtgatgatc |
38569488 |
T |
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| Q |
317 |
gtgccacagttctctgtctcttggatagccacaacactgaattacctccaaaataaattac |
377 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38569487 |
gtgccacagttctctgtctcttggatagccacgacactgaattacctccaaaataaattac |
38569427 |
T |
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