View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_3 (Length: 803)
Name: NF16056_low_3
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_3 |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 625; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 18 - 788
Target Start/End: Original strand, 5213812 - 5214581
Alignment:
| Q |
18 |
acataggccaattgtccctctgcaatgtcatgtgcacgggaaagcatctcaggcacaatggacaacaaccagggccgaattttgtagtttttcattcgtt |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5213812 |
acataggccaattgtccctctgcagtgtcatgtgcacgggaaagcatctcgggcacaatggacaacaaccagggccgaattttgtagtttttcattcgtt |
5213911 |
T |
|
| Q |
118 |
ctttgaatgctcttcttccttgaaatgccttaagacttgggataaaatttctccaacttgtattgtcttcaaaaccttctaaaaccttcgtaaatcttca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5213912 |
ctttgaatgctcttcttccttgaaatgccttaagacttgagacaaaatttctccaacttgtattgtcttcaaaagcttctaaaaccttcgtaaatcttca |
5214011 |
T |
|
| Q |
218 |
ttctttaacttacatcagatgtattgttttgctgaattacatgatttattaataaaaagactcaacacatatggagttgtctgattaaaaaagaaattga |
317 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5214012 |
ttctttaacttacatcagatatattgttttgctgaattacatgatttatcaataaaaagactcaacacatatggagttgtctggttaaaaaagaaattga |
5214111 |
T |
|
| Q |
318 |
attacaatgactcaaaccaaaacaacacnnnnnnn----tccctcaaactatgaacaactcatctgcaactcccctaatttatcctcaaatgattattca |
413 |
Q |
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||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5214112 |
attacaacgactcaaaccaaaacaacacaaaaaaaaaaatccctcaaaccatgaacaactcatctgaaactcccctaatttatcctcaaatgattattca |
5214211 |
T |
|
| Q |
414 |
aatgactcaaaaacattgctaaaatattatatgatatgatataatatagtgccatcaaatagtagtgtaggatcctatttcagctaagttgaattgaaca |
513 |
Q |
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| T |
5214212 |
aatgactcaaaaacattactaaaatattatat-----gatataatatagtgtcatcaaatagtagtgtagggtcctatttcaactaaattgaattgaaca |
5214306 |
T |
|
| Q |
514 |
tttcattgtcatgaagaaacatggtaatccgttgaaataatttccaacgggctataattgtttttggtacttggcatgttggagctagatgttgattggc |
613 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5214307 |
tttcattatcatgaagaaacatggtaatccgttgaaataattttcaacgggctataattgtttttggtacttggcatgttggagctagatgttgattggc |
5214406 |
T |
|
| Q |
614 |
attttctcatcaatgaggtgtcaaaatctatgattggattttacctaaccaataatgtcatttttgtctaacttcaaattgataattagccaaaaaatta |
713 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5214407 |
attttcttatcaatgaggtgtcaaaatctatgattggattttacctaaccaataatgtcatttttgtctagcttcaaattgataattagccaaaaaatta |
5214506 |
T |
|
| Q |
714 |
ttcacatggacatgtttcattgctagcatcacaggcgataaatatttgcttccccgacctcggtagcgtcctttg |
788 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
5214507 |
ttcacatggacatgtttcattactagcatcacaggcgataattatttgcttccccgaccttggtagcgtcctttg |
5214581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 8308989 - 8309041
Alignment:
| Q |
235 |
gatgtattgttttgctgaattacatgatttattaataaaaagactcaacacat |
287 |
Q |
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||||| |||||||||||| ||||||||||| ||| ||||||||||||| |||| |
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| T |
8308989 |
gatgtcttgttttgctgatttacatgatttcttactaaaaagactcaaaacat |
8309041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 249 - 330
Target Start/End: Complemental strand, 20044321 - 20044238
Alignment:
| Q |
249 |
ctgaattacatgatttattaataaaaagactcaaca--catatggagttgtctgattaaaaaagaaattgaattacaatgactc |
330 |
Q |
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|||||||||||||||| | ||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
20044321 |
ctgaattacatgatttttcaataaaaagactcaaaatacatatggagttgcatgattaaggaagaaattgaattacaatgactc |
20044238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 32022056 - 32021998
Alignment:
| Q |
136 |
cttgaaatgccttaagacttgggataaaatttctccaacttgtattgtcttcaaaacctt |
195 |
Q |
| |
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||||||||||||| | | ||||||| || |||| |||||||||||||||||||||||||| |
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| T |
32022056 |
cttgaaatgccttgaaatttgggatgaa-tttccccaacttgtattgtcttcaaaacctt |
32021998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 13275704 - 13275749
Alignment:
| Q |
237 |
tgtattgttttgctgaattacatgatttattaataaaaagactcaa |
282 |
Q |
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||||||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
13275704 |
tgtattgctttgccgaattacatgatttagcaataaaaagactcaa |
13275749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 26297904 - 26297809
Alignment:
| Q |
235 |
gatgtattgttttgctgaattacatgatttattaataaaaagactcaacacatatggagttgtctgattaaaaaagaaattgaattacaatgactc |
330 |
Q |
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||||| ||||||||| || ||||||||||||| | |||| |||||||||||||||| ||||| ||||| | | |||||||||||||| ||||| |
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| T |
26297904 |
gatgtcttgttttgccgatttacatgatttatcactaaatagactcaacacatatgaagttgcatgatttaggataaaattgaattacaacgactc |
26297809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 15850883 - 15850940
Alignment:
| Q |
140 |
aaatgccttaagacttgggataaaatttctccaacttgtattgtcttcaaaaccttct |
197 |
Q |
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||||||||| | | ||||||| || |||||| |||||||||||||||||||||||||| |
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| T |
15850883 |
aaatgccttgaaatttgggatgaattttctcaaacttgtattgtcttcaaaaccttct |
15850940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 1174075 - 1173996
Alignment:
| Q |
223 |
taacttacatcagatgtattgttttgctgaattacatgatttattaataaaaagactcaa--cacatatggagttgtctg |
300 |
Q |
| |
|
|||||| ||| |||| | ||| ||||| ||| |||||||||||||||||||||||||||| ||| |||| ||||||||| |
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|
| T |
1174075 |
taacttccatgagatattttgctttgccgaagtacatgatttattaataaaaagactcaaagcacctatgaagttgtctg |
1173996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 34935186 - 34935241
Alignment:
| Q |
136 |
cttgaaatgccttaagacttgggataaaatttctccaacttgtattgtcttcaaaa |
191 |
Q |
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|||||||||||||| ||||||||| || |||| |||||||||||| ||||||||| |
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| T |
34935186 |
cttgaaatgccttagaacttgggatgaattttccccaacttgtattatcttcaaaa |
34935241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 20977084 - 20977016
Alignment:
| Q |
154 |
ttgggataaaatttctccaacttgtattgtcttcaaaaccttctaaaaccttcgtaaatcttcattctt |
222 |
Q |
| |
|
|||||| |||||||| |||| ||||||||| ||||| ||||||||||| ||| || |||||||||||| |
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|
| T |
20977084 |
ttgggacaaaatttccccaaattgtattgtattcaacaccttctaaaagctttgtcgatcttcattctt |
20977016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 39526853 - 39526912
Alignment:
| Q |
146 |
cttaagacttgggataaaatttctccaacttgtattgtcttcaaaaccttctaaaacctt |
205 |
Q |
| |
|
|||| |||||| || | ||||||||||||||| | |||||||||| |||||||||||||| |
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|
| T |
39526853 |
cttaggacttgagacataatttctccaacttgcaatgtcttcaaagccttctaaaacctt |
39526912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 30831126 - 30831176
Alignment:
| Q |
146 |
cttaagacttgggataaaatttctccaacttgtattgtcttcaaaaccttc |
196 |
Q |
| |
|
|||| ||||||||| || |||||| |||||||| ||||||||||||||||| |
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| T |
30831126 |
cttaggacttgggacaacatttcttcaacttgttttgtcttcaaaaccttc |
30831176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 3349 - 3401
Alignment:
| Q |
170 |
ccaacttgtattgtcttcaaaaccttctaaaaccttcgtaaatcttcattcttt |
223 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |
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|
| T |
3349 |
ccaacttgtattgtcttcaaagccttccaaaacc-tcgttgatcttcattcttt |
3401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 3993 - 4045
Alignment:
| Q |
170 |
ccaacttgtattgtcttcaaaaccttctaaaaccttcgtaaatcttcattcttt |
223 |
Q |
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||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |
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| T |
3993 |
ccaacttgtattgtcttcaaagccttccaaaacc-tcgttgatcttcattcttt |
4045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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