View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_30 (Length: 380)
Name: NF16056_low_30
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 67 - 367
Target Start/End: Original strand, 24213336 - 24213636
Alignment:
| Q |
67 |
ttgatcaatactatgcctataattttattgttagatccatttcaaagcattaatgaattctctttcaatacttaaaaaggataggaacgtacatatatta |
166 |
Q |
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| T |
24213336 |
ttgagcaatactatgcctataattttattgttagatccatttcaaagcattaatgaattctctttcaatacttaaaaaggataggaacgtacatatatta |
24213435 |
T |
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| Q |
167 |
ttggaccataacgagtggtgagcctaaagtagatagatttaaatcaattaaaggttattgtcggttatcaatgatttttgaagggacaattatcgacgtg |
266 |
Q |
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| T |
24213436 |
ttggaccacaacgagtggtgagcctaaagtagatagatttaaatcaattaaaggttattgtcggttatcaatgatttttgaagggacaattatcgacgtg |
24213535 |
T |
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| Q |
267 |
ttcacatgcaccttcgttgattctcttcatgttttctttcccttaatatattattacacgcatgcatgatctatcttctactcaacaaagcacaaacaca |
366 |
Q |
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| T |
24213536 |
ttcacatgcaccttcgttgattctcttcatgttttctttcccttaatatattattacacgcatgcatgatctatcttctactcaacaaagcacaaacaca |
24213635 |
T |
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| Q |
367 |
c |
367 |
Q |
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| T |
24213636 |
c |
24213636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 24209933 - 24210012
Alignment:
| Q |
72 |
caatactatgcctataattttattgttagatccatttcaaagcattaatgaattctctttcaatacttaaaaaggatagg |
151 |
Q |
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| T |
24209933 |
caatactatgcctataatttaattgttagattcatttcaaagcattcatgaattctctttcaatacttaaaaaggatagg |
24210012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 24210124 - 24210190
Alignment:
| Q |
298 |
ttttctttcccttaatatattattacacgcatgcatgatctatcttctactcaacaaagcacaaacacac |
367 |
Q |
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| T |
24210124 |
ttttctttcccttaatatatta---cacacatgcatgatctctcttctactcaacaaagcaaaaacacac |
24210190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 946327 - 946364
Alignment:
| Q |
20 |
aagtgagagttccgatacaccgtaatttgcgggtgtac |
57 |
Q |
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| T |
946327 |
aagtgagagtaccggtacaccgtaatttgcgggtgtac |
946364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 8461577 - 8461540
Alignment:
| Q |
20 |
aagtgagagttccgatacaccgtaatttgcgggtgtac |
57 |
Q |
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| T |
8461577 |
aagtgagagtaccggtacaccgtaatttgcgggtgtac |
8461540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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