View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_33 (Length: 364)
Name: NF16056_low_33
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 39168062 - 39167822
Alignment:
| Q |
13 |
aatattatgaacaatatgtcagagctcttgaccaagcggatcaggcagacaggtaaatactaattactatgtttctctaatttcccatgtgttgtagcag |
112 |
Q |
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| T |
39168062 |
aatattatgaacaatatgtcagagctcttgaccaagcggatcaggcagacaggtaaatactaattactatgtttctctaatttcccatgtgttgtagcag |
39167963 |
T |
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| Q |
113 |
attctgtacattgaaatctttttacaggacccagctcagtaaagcttaccagactgctggggtgctctttgaagtgctttgtgccgttaacaagactgag |
212 |
Q |
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| T |
39167962 |
attctgtacattgaaatctttttacaggacccagctcagtaaagcttaccagactgctggggtgctctttgaagtgctttgtgccgttaacaagactgag |
39167863 |
T |
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| Q |
213 |
aaggtcgaagaagtagctcctgaggttagtctccattcata |
253 |
Q |
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| T |
39167862 |
aaggtcgaagaagtagctcctgaggttagtctccagtcata |
39167822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 347
Target Start/End: Complemental strand, 39167757 - 39167728
Alignment:
| Q |
318 |
ctggaggcattttttgtgtttgcagattat |
347 |
Q |
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| T |
39167757 |
ctggaggcattttttgtgtttgcagattat |
39167728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 43965427 - 43965335
Alignment:
| Q |
151 |
gtaaagcttaccagactgctggggtgctctttgaagtgctttgtgccgttaacaagactgagaaggtcgaagaagtagctcctgaggttagtc |
243 |
Q |
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| T |
43965427 |
gtaaagcttaccagaccgccggtgtgctttttgaagtgctttgtgctgttaacaagactgagaaagtcgaagaagttgctcctgaggttagtc |
43965335 |
T |
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