View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_34 (Length: 362)
Name: NF16056_low_34
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 34 - 344
Target Start/End: Original strand, 47436191 - 47436503
Alignment:
| Q |
34 |
taaattgttttatagtagagactataaataagcaatttaaaagtatatatacctcaacctttaatctagcattctcaattctaagttgattgtcgttaga |
133 |
Q |
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| T |
47436191 |
taaattgttttatagtagagactataaataagcaatttaaaagtatatatacctcaacctttaatctagcattctcaattctaagctgattgtcgttaga |
47436290 |
T |
|
| Q |
134 |
tgacatttcaccaatagaaattggaccagtacaatttgtacataaagtgtcttttagtgcccccttatagatctcattttcagcacgaagcttatcattc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47436291 |
tgacatttcaccaatagaaattggaccagtacaatttgtacataaagtgtcttttagtgcccccttatagatctcattttcagcacgaagcttatcattc |
47436390 |
T |
|
| Q |
234 |
tcatccccc--aagatcattttggtgaagttcctgttgtgtctgcatgcatacatgtgctcaaagaatcatcaaattataatgatacaatatatttttta |
331 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47436391 |
tcatccctcaaaagatcattttggtgaagttcctgttgtgtctgcatgcatacatgtgctcaaagaatcatcaaattataatgatacaatatatttttta |
47436490 |
T |
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| Q |
332 |
tttacatcaatcc |
344 |
Q |
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||||||||||||| |
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| T |
47436491 |
tttacatcaatcc |
47436503 |
T |
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