View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16056_low_35 (Length: 354)
Name: NF16056_low_35
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_35 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 38729897 - 38729560
Alignment:
| Q |
13 |
gagatgaaattcgcagggttcagaccaaactttggcttgtttacattgatcattgagtcacatgcaaaatcagggaagcttgatattgatatgtctgcat |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38729897 |
gagatgaaattagcagggttcagaccaaactttggcttgtatacattgatcattgagtcacatgcaaaatcagggaagcttgatattgctatgtctgcat |
38729798 |
T |
|
| Q |
113 |
tttcagatatatatggagaaagctggatttctaccaactccatctacgtatgcttgtctcttggaaatgcatgctgcgtctggacaaattgatcatgcca |
212 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
38729797 |
tttcagatat----ggagaaagctggatttctaccaactccatctacatatgcttgtctcttggaaatgcatgctgcgtctggacaaatcgatcatgcta |
38729702 |
T |
|
| Q |
213 |
tcaaactgtacaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgt |
312 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
38729701 |
tgaaactgtacaattcaatgactaatgcaggtttaaggccaggcctgagcacttatactgttcttttatctctacttgctaataagaagctggtggatgt |
38729602 |
T |
|
| Q |
313 |
tgctgccaaagttctacttgaaatgaagaccatgggatattc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38729601 |
tgctgccaaagttctacttgaaatgaagacaatgggatattc |
38729560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 42 - 354
Target Start/End: Original strand, 385674 - 385982
Alignment:
| Q |
42 |
ctttggcttgtttacattgatcattgagtcacatgcaaaatcagggaagcttgatattgatatgtctgcattttcagatatatatggagaaagctggatt |
141 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
385674 |
ctttggcttgtatacattgatcatcgagtctcatgcaaaatcagggaagcttgatattgctatgtctgcattttcagacat----ggagaaagctggatt |
385769 |
T |
|
| Q |
142 |
tctaccaactccatctacgtatgcttgtctcttggaaatgcatgctgcgtctggacaaattgatcatgccatcaaactgtacaattcaatgactaatgca |
241 |
Q |
| |
|
||||| ||||| |||||| || |||||||| ||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
385770 |
tctactaactctatctacatacgcttgtctattggaaatgcatgcttcatccggacaaattgatcatgccatgaaactgtacaattcaatgactaatgca |
385869 |
T |
|
| Q |
242 |
ggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaaga |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
385870 |
ggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaaga |
385969 |
T |
|
| Q |
342 |
ccatgggatattc |
354 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
385970 |
cgatgggatattc |
385982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University