View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_37 (Length: 341)
Name: NF16056_low_37
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 26158231 - 26157972
Alignment:
| Q |
1 |
tatgcagcaacacctagcacaacctcactgaaaaatttgcaccctctgatttccaatttctgaagacttcgacaaccttgggagaaatccaatagccctt |
100 |
Q |
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| T |
26158231 |
tatgcagctacacctagcacaacctcactgaaaaatttgcaccctctgatttccaatttctgaagacttcgacaaccttgggagaaatccaatagccctt |
26158132 |
T |
|
| Q |
101 |
tatcggtttgaccgcaataaccaagaagtatccatttcaagtttacaccgaatcttccaatgtattctaggcctttatctgtcaaccctcccgacctaag |
200 |
Q |
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| T |
26158131 |
tatcggtttgaccgcaataaccaagaagtatccatttcaagtttacaccgaatcttccaatgtattctaggtctttatctgtcaaccctcccgacctaag |
26158032 |
T |
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| Q |
201 |
atacagagcaaatcttctaagttttacacaaccttgtagtaattcctttactccatcatc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26158031 |
atacagagcaaatcttctaagttttacacaaccttgtagtaattcctttactccatcatc |
26157972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 28268152 - 28268103
Alignment:
| Q |
275 |
aacctgtgtacattcaataagaaatatatttttggatattgacttggagc |
324 |
Q |
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| T |
28268152 |
aacctgtgtacattcaataagaaatatatttttggatattgacttggagc |
28268103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 35094226 - 35094367
Alignment:
| Q |
3 |
tgcagcaacacctagcacaacctcactgaaaaatttgcaccctctgatttccaatttctgaagacttcgacaaccttgggagaaatccaatagcccttta |
102 |
Q |
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|||||||||| |||| || ||||||||||||| |||||||| ||||| | |||||||||||| ||||||||| |||||| ||||| |||||| | |
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| T |
35094226 |
tgcagcaacagctagtgcatgctcactgaaaaatgaacaccctctcatttcgagtttctgaagactcggacaacctttggagaattccaagagccctgca |
35094325 |
T |
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| Q |
103 |
tcggtttgaccgcaataaccaagaagtatccatttcaagttt |
144 |
Q |
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| T |
35094326 |
tcagtttcgccgacataaccgagaagtatccatctcacgttt |
35094367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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