View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_39 (Length: 338)
Name: NF16056_low_39
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 24 - 326
Target Start/End: Original strand, 28656639 - 28656941
Alignment:
| Q |
24 |
aataaatcgaaggacactgattattaataattcaacattttactaattggtcactatgattgaatcaggagcacattcagtgggaagagtacactgcata |
123 |
Q |
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| T |
28656639 |
aataaatggaaggacactgattattaataattcaacattttactaattggtcactatgattgaatcaggagcacattcagtgggaagagtacactgcata |
28656738 |
T |
|
| Q |
124 |
aatatggtccacagactataccctatagtggacctaacgctagaccctgcatatgttgtctacctaaaacgtagatgtccaaaaccaaacccaaatgcaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28656739 |
aatatggtccacagactataccctatagtggacccaacgctagaccctacatatgttgtctacctaaaacgtagatgtccaaaaccaaacccaaaggcaa |
28656838 |
T |
|
| Q |
224 |
aagctgtccaatatgtaaggaatgatctaaaaactccattgataattgataacaactactacaagaacattttgcagcataagggtcttctcactgttga |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || |
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| T |
28656839 |
aagctgtccaatatgtaaggaatgatctaaaaactccattgataattgacaacaactactacaagaacattttgcaacataagggtcttctaactgtgga |
28656938 |
T |
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| Q |
324 |
tga |
326 |
Q |
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||| |
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| T |
28656939 |
tga |
28656941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 326
Target Start/End: Original strand, 28636156 - 28636447
Alignment:
| Q |
35 |
ggacactgattattaataattcaacattttactaattggtcactatgattgaatcaggagcacattcagtgggaagagtacactgcataaatatggtcca |
134 |
Q |
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| T |
28636156 |
ggacactgattattaataatgtaacattttattaactggtcactttgattaaatcaggagcacactcagttggaagagtacattgcatgaatttggtcca |
28636255 |
T |
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| Q |
135 |
cagactataccctatagtggacctaacgctagaccctgcatatgttgtctacctaaaacgtagatgtccaaaaccaaacccaaatgcaaaagctgtccaa |
234 |
Q |
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| T |
28636256 |
cagactataccccacagtggatccaacgttagatcctacacatgctacctacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaa |
28636355 |
T |
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| Q |
235 |
tatgtaaggaatgatctaaaaactccattgataattgataacaactactacaagaacattttgcagcataagggtcttctcactgttgatga |
326 |
Q |
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| T |
28636356 |
tatgtgaggaatgatctaaaaacaccaatgataattgacaacaactactacaaaaacatcttgcaacataagggtcttctaactgtggatga |
28636447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 70 - 314
Target Start/End: Original strand, 28606406 - 28606650
Alignment:
| Q |
70 |
ttggtcactatgattgaatcaggagcacattcagtgggaagagtacactgcataaatatggtccacagactataccctatagtggacctaacgctagacc |
169 |
Q |
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||||||||| ||||| ||| ||||||||| || || ||||||||||| ||||| ||| ||||||||||||||||||| | |||||| | |||| |||| | |
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| T |
28606406 |
ttggtcactttgattcaattaggagcacactcggttggaagagtacattgcatgaatttggtccacagactataccccacagtggatccaacgttagatc |
28606505 |
T |
|
| Q |
170 |
ctgcatatgttgtctacctaaaacgtagatgtccaaaaccaaacccaaatgcaaaagctgtccaatatgtaaggaatgatctaaaaactccattgataat |
269 |
Q |
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|| || ||| || ||||||||||||||| || |||| |||||| ||| || ||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
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| T |
28606506 |
ctacacatgctgcctacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataat |
28606605 |
T |
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| Q |
270 |
tgataacaactactacaagaacattttgcagcataagggtcttct |
314 |
Q |
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||| |||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
28606606 |
tgacaacaactactacaaaaacatcttgcaacataagggtcttct |
28606650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 67 - 314
Target Start/End: Original strand, 28663758 - 28664005
Alignment:
| Q |
67 |
taattggtcactatgattgaatcaggagcacattcagtgggaagagtacactgcataaatatggtccacagactataccctatagtggacctaacgctag |
166 |
Q |
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|||||||||||| ||||| ||||||||| ||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| | ||||||| || ||||| |
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| T |
28663758 |
taattggtcactttgattcaatcaggaggacactcagtgggaagagtacattgcatgaatatggtccatagactataccccacggtggacccaaagctag |
28663857 |
T |
|
| Q |
167 |
accctgcatatgttgtctacctaaaacgtagatgtccaaaaccaaacccaaatgcaaaagctgtccaatatgtaaggaatgatctaaaaactccattgat |
266 |
Q |
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|||| |||||| || ||| ||||||| |||||| |||| |||||| ||| || |||| ||||| | ||||| ||| |||||| |||||| ||| |||| |
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| T |
28663858 |
accccacatatgctgcctatctaaaacttagatgcccaacaccaaatccagatccaaatgctgttctatatgcaagaaatgatagaaaaacaccaatgat |
28663957 |
T |
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| Q |
267 |
aattgataacaactactacaagaacattttgcagcataagggtcttct |
314 |
Q |
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|||||| |||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
28663958 |
aattgacaacaactactacaaaaacatcttgcaacataagggtcttct |
28664005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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