View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16056_low_41 (Length: 332)

Name: NF16056_low_41
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16056_low_41
NF16056_low_41
[»] chr4 (10 HSPs)
chr4 (136-326)||(566608-566798)
chr4 (1-59)||(566875-566933)
chr4 (253-305)||(5035628-5035680)
chr4 (254-308)||(12124827-12124881)
chr4 (139-180)||(1523994-1524035)
chr4 (254-299)||(12126892-12126937)
chr4 (265-305)||(2367689-2367729)
chr4 (253-305)||(2460603-2460655)
chr4 (253-305)||(2486313-2486365)
chr4 (253-305)||(2525763-2525815)
[»] chr6 (9 HSPs)
chr6 (227-326)||(12097396-12097495)
chr6 (259-299)||(6437161-6437201)
chr6 (247-311)||(7132543-7132607)
chr6 (247-311)||(7135466-7135530)
chr6 (253-311)||(6395775-6395833)
chr6 (139-180)||(9412454-9412495)
chr6 (142-183)||(14810041-14810082)
chr6 (255-312)||(14821621-14821678)
chr6 (247-311)||(6427422-6427486)
[»] chr7 (4 HSPs)
chr7 (247-308)||(15091350-15091411)
chr7 (247-311)||(10168807-10168871)
chr7 (247-311)||(10176332-10176396)
chr7 (253-311)||(7978108-7978165)
[»] chr3 (2 HSPs)
chr3 (142-180)||(51120330-51120368)
chr3 (247-311)||(51763147-51763211)
[»] chr5 (3 HSPs)
chr5 (256-305)||(32268776-32268825)
chr5 (247-322)||(41900251-41900326)
chr5 (142-180)||(41886296-41886334)
[»] chr1 (3 HSPs)
chr1 (265-305)||(15837976-15838016)
chr1 (247-311)||(33161433-33161497)
chr1 (139-176)||(7561347-7561384)
[»] chr8 (1 HSPs)
chr8 (247-305)||(32152212-32152270)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 136 - 326
Target Start/End: Complemental strand, 566798 - 566608
Alignment:
Q  136 gacttttatttacctgatgactgttgggaacgtgtcttcaaattcatcgtcaccaacaaattcatcatcagcaacgaatacagaaacaagaatcgtgata 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566798 gacttttatttacctgatgactgttgggaacgtgtcttcaaattcatcgtcaccaacaaattcatcatcagcaacgaatacagaaacaagaatcgtgata 566699  T
Q  236 attacttgatattgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtgctcc 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  566698 attacttgatattgaattctctctccttagtctccaaacagtttctctccatcaccgacagtcttcgattttcacttgctatctgtactcc 566608  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 566933 - 566875
Alignment:
Q  1 ctaatatcatttgcagttgtcctgaatatgaaaaagaagaagagaagtaaagagtttat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566933 ctaatatcatttgcagttgtcctgaatatgaaaaagaagaagagaagtaaagagtttat 566875  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 5035680 - 5035628
Alignment:
Q  253 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    ||||| ||||| || || ||||||||||||||||||||| |||||||||||||    
T  5035680 tctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgatt 5035628  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 12124881 - 12124827
Alignment:
Q  254 ctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttc 308  Q
    |||||||| | ||||||||||| ||||||||||||||| ||||||| | ||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattttc 12124827  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 1523994 - 1524035
Alignment:
Q  139 ttttatttacctgatgactgttgggaacgtgtcttcaaattc 180  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  1523994 ttttacttacctgatgactgttgggaatctgtcttcaaattc 1524035  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 12126937 - 12126892
Alignment:
Q  254 ctctctccttagtctccaaacagtttctctccatcaccgaccgtct 299  Q
    |||||||| | ||||||||||| ||||||||||||||| |||||||    
T  12126937 ctctctccattgtctccaaacaatttctctccatcaccaaccgtct 12126892  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 2367689 - 2367729
Alignment:
Q  265 gtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    ||||||||||| ||||||||||||||| ||||||| |||||    
T  2367689 gtctccaaacaatttctctccatcaccaaccgtctccgatt 2367729  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 2460655 - 2460603
Alignment:
Q  253 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    ||||||||| | |||||||||||||| |||||||||||| | ||||| |||||    
T  2460655 tctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgatt 2460603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 2486365 - 2486313
Alignment:
Q  253 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    ||||||||| | ||||| ||||||||||| ||||||||| ||||||| |||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgatt 2486313  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 2525815 - 2525763
Alignment:
Q  253 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    ||||||||| | ||||| ||||||||||| ||||||||| || ||||||||||    
T  2525815 tctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgatt 2525763  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 227 - 326
Target Start/End: Complemental strand, 12097495 - 12097396
Alignment:
Q  227 atcgtgataattacttgatattgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtgctcc 326  Q
    ||||||||  ||||||||  |||||||||||||| |||||||||||||| ||||||| |||||  ||||||||||||||||||||| |||||||| ||||    
T  12097495 atcgtgatcgttacttgactttgaattctctctctttagtctccaaacaatttctcttcatcagagaccgtcttcgattttcacttactatctgtactcc 12097396  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 6437201 - 6437161
Alignment:
Q  259 tccttagtctccaaacagtttctctccatcaccgaccgtct 299  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  6437201 tccttagtctccaaacagttcctctccatcaccaaccgtct 6437161  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 7132607 - 7132543
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| || || ||||||||| |||| |||||||||| |||||||| |||||| |||||    
T  7132607 ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcact 7132543  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 7135530 - 7135466
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| || || ||||||||| |||| |||||||||| |||||||| |||||| |||||    
T  7135530 ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcact 7135466  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 6395833 - 6395775
Alignment:
Q  253 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||| | |||||||| ||||| |||||||||||| | | |||||||||||||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgattttcact 6395775  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 9412495 - 9412454
Alignment:
Q  139 ttttatttacctgatgactgttgggaacgtgtcttcaaattc 180  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  9412495 ttttatttacctgatgaatgttgggaaagtatcttcaaattc 9412454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 14810082 - 14810041
Alignment:
Q  142 tatttacctgatgactgttgggaacgtgtcttcaaattcatc 183  Q
    |||||||||||||| ||||||||||||||||| | |||||||    
T  14810082 tatttacctgatgagtgttgggaacgtgtctttagattcatc 14810041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 14821678 - 14821621
Alignment:
Q  255 tctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcactt 312  Q
    ||||||| | |||||||| ||||| ||||| |||||| | ||||||||||||||||||    
T  14821678 tctctccctcgtctccaagcagttcctctctatcaccaatcgtcttcgattttcactt 14821621  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 6427486 - 6427422
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    |||| |||||||||| | |||||||| ||||| |||||||||||| | ||||||| | |||||||    
T  6427486 ttgagttctctctccctcgtctccaagcagttcctctccatcaccaatcgtcttcaaatttcact 6427422  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 15091350 - 15091411
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttc 308  Q
    ||||||||||||||| | |||||||||||||| |||||||||||| || |||||| ||||||    
T  15091350 ttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttc 15091411  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 10168807 - 10168871
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||| ||  ||||||||| |||||    
T  10168807 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcact 10168871  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 10176332 - 10176396
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||| ||  ||||||||| |||||    
T  10176332 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcact 10176396  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 7978165 - 7978108
Alignment:
Q  253 tctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| ||||| |  |||||||||||||||||| |||||||| ||||||||||    
T  7978165 tctctctccttcgtctc-atgcagtttctctccatcaccaaccgtcttagattttcact 7978108  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 51120330 - 51120368
Alignment:
Q  142 tatttacctgatgactgttgggaacgtgtcttcaaattc 180  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  51120330 tatttacctgatgactgttgggaatgtgtcttcaaattc 51120368  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 51763147 - 51763211
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||||||| | || ||||||||||| |||||||||||| ||||| | ||||| |||||    
T  51763147 ttgaattctctctccatcgtttccaaacagttcctctccatcacccaccgtttccgattctcact 51763211  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 32268825 - 32268776
Alignment:
Q  256 ctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    |||||| | |||||||||||||| |||||||||||| |||||||||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgatt 32268776  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 41900251 - 41900326
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtg 322  Q
    ||||| ||||||||  | ||||||||||||||||||||||||||| ||  ||||||||| || ||| | |||||||    
T  41900251 ttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctcttacaatctgtg 41900326  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 41886296 - 41886334
Alignment:
Q  142 tatttacctgatgactgttgggaacgtgtcttcaaattc 180  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattc 41886334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 15837976 - 15838016
Alignment:
Q  265 gtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  15837976 gtctccaaacagtttctctccatcaccaaccgtctccgatt 15838016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 33161497 - 33161433
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgattttcact 311  Q
    ||||||||||| ||| | ||||||||||||||||||||||||||  |  |||||||||| |||||    
T  33161497 ttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcact 33161433  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 7561384 - 7561347
Alignment:
Q  139 ttttatttacctgatgactgttgggaacgtgtcttcaa 176  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  7561384 ttttatttacctgatgactgttggaaacatgtcttcaa 7561347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 32152270 - 32152212
Alignment:
Q  247 ttgaattctctctccttagtctccaaacagtttctctccatcaccgaccgtcttcgatt 305  Q
    |||||||| |||||| | |||||||||||||| |||||||||||| || |||| |||||    
T  32152270 ttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgatt 32152212  T

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