View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_42 (Length: 311)
Name: NF16056_low_42
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 2458606 - 2458872
Alignment:
| Q |
19 |
aaatatacatacgatctaattatgtttgcatgcttcaaaggtctctttatggcctcaaggaagctccaaatgcatacactaatatatatgtggccataaa |
118 |
Q |
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| T |
2458606 |
aaatatacatac--tctaattatatttgcatgcttcaaaagtctctttatggcctcaacgaagctccaaatgcatacactaatatatatgtggccataaa |
2458703 |
T |
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| Q |
119 |
gacaatattaattgtggcctattttgttgtctatgttgatgatttacttttcaacggtaactccttcaattttcatctcggtgttgagcttcttcccatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2458704 |
gacaatattaattgtggcctattttgttgtctatgttgatgatttacttttcaacggtaacaccttcaattttcatctcggtgttgagcttcttcccatt |
2458803 |
T |
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| Q |
219 |
tcaaaatgcatttttctttcccaatgacattatatatatccaagatatacttcaaataggaaacatgattgat |
291 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
2458804 |
tcaaaatgcatttttctttcccaatgacat----tatatccaagatatacttcaaaaaggaaacatgattgat |
2458872 |
T |
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