View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16056_low_45 (Length: 306)

Name: NF16056_low_45
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16056_low_45
NF16056_low_45
[»] chr5 (8 HSPs)
chr5 (3-153)||(39899013-39899176)
chr5 (217-294)||(39898872-39898949)
chr5 (3-70)||(39848486-39848553)
chr5 (72-153)||(38971818-38971899)
chr5 (9-55)||(37467006-37467052)
chr5 (7-153)||(39912045-39912206)
chr5 (3-59)||(39865574-39865630)
chr5 (222-277)||(39911907-39911963)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 39899176 - 39899013
Alignment:
Q  3 accagctcaattccagcgcttttggttatgggaaaagcgtcaaaaccatacatgtcgaccttctcggcc-------------gaggaagcaggacttgta 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||| ||||    
T  39899176 accagctcaattccagcgcttttggttatgggaaaagcgtcaaaaccatacatgtcgaccttctcggcctttgacaaacattgaggaagcaggacctgta 39899077  T
Q  90 aattcatcagatctatgaagcctttcaatatttatttgctcacatactcccttcaagcttctta 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39899076 aattcatcagatctatgaagcctttcaatatttatttgctcacatactcccttcaagcttctta 39899013  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 39898949 - 39898872
Alignment:
Q  217 aaagtttctttttcccctcatttatgttttatgttgatctgttcatgaaattttatatcaacacttaattcttcatct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39898949 aaagtttctttttcccctcatttatgttttatgttgatctgttcatgaaattttatatcaacacttaattctttatct 39898872  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 39848553 - 39848486
Alignment:
Q  3 accagctcaattccagcgcttttggttatgggaaaagcgtcaaaaccatacatgtcgaccttctcggc 70  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  39848553 accagctcaattccagcgcttttggttatgggaaaagcgtgaaaaccatacatgtcgaccatctcggc 39848486  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 38971818 - 38971899
Alignment:
Q  72 gaggaagcaggacttgtaaattcatcagatctatgaagcctttcaatatttatttgctcacatactcccttcaagcttctta 153  Q
    |||||||| |||| |||||| |||||||||||||||||| |||||||||   |||||||| |||| |||||||| |||||||    
T  38971818 gaggaagccggacatgtaaagtcatcagatctatgaagcttttcaatatgattttgctcatatacccccttcaaacttctta 38971899  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 37467052 - 37467006
Alignment:
Q  9 tcaattccagcgcttttggttatgggaaaagcgtcaaaaccatacat 55  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||    
T  37467052 tcaattccagcgcttttggctatgggcaaagcgtcaaaaccatacat 37467006  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 39912206 - 39912045
Alignment:
Q  7 gctcaattccagcgcttttggttatgggaaaagcgtcaaaaccatacatgtcgaccttctcggcc-------------gaggaagcaggacttgtaaatt 93  Q
    |||| |||||||||||||||| |||||| |||||||| ||||||||||| ||| || | ||||||             |||||||||| || ||||||||    
T  39912206 gctcgattccagcgcttttggctatgggcaaagcgtctaaaccatacatatcgtccatttcggccattgacatacattgaggaagcagcacctgtaaatt 39912107  T
Q  94 catcagatctatgaagc--ctttcaatatttatttgctcacatactcccttcaagcttctta 153  Q
     || |||||||||||||   ||| ||||||  |||||||| |||| ||||||||||||||||    
T  39912106 tatgagatctatgaagcttttttgaatattattttgctcatatacccccttcaagcttctta 39912045  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 39865630 - 39865574
Alignment:
Q  3 accagctcaattccagcgcttttggttatgggaaaagcgtcaaaaccatacatgtcg 59  Q
    ||||||||||||||||||||||||| |||  | ||||||| ||||| ||||||||||    
T  39865630 accagctcaattccagcgcttttgggtatttgcaaagcgtgaaaacgatacatgtcg 39865574  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 39911963 - 39911907
Alignment:
Q  222 ttctttttcccctcatttatgttttatgttg-atctgttcatgaaattttatatcaa 277  Q
    ||||||| |||| ||||| |||||||||||| |||| ||||||| ||||||||||||    
T  39911963 ttcttttcccccacatttctgttttatgttgaatctattcatgacattttatatcaa 39911907  T

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