View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_48 (Length: 270)
Name: NF16056_low_48
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 9909290 - 9909046
Alignment:
| Q |
10 |
gaagaatatcaaaagcaaggatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcat |
109 |
Q |
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|||||| ||||||| ||| |||||||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9909290 |
gaagaaaatcaaaatcaaagatgggttttctacaacttttggaagtggcttccatgccagttattcaagtcctacttattagtgcattgggagctttcat |
9909191 |
T |
|
| Q |
110 |
ggctactcagtatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaatatattaatcaatttaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9909190 |
ggctactcagtatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaatatattaatcaatttaaa |
9909091 |
T |
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| Q |
210 |
taaatatagggtaacgcttatatacgtacataacataacacatgt |
254 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9909090 |
taaatatagggtaaagcttatatacgtacataacataacacatgt |
9909046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 9863075 - 9863276
Alignment:
| Q |
10 |
gaagaatatcaaaagcaaggatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcat |
109 |
Q |
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| T |
9863075 |
gaagaaaatcaaaatcaaagatgggttttatacaacttttggaagtggcttccatgccagttattcaagtcctacttattagtgcattgggagctttcat |
9863174 |
T |
|
| Q |
110 |
ggctactcagtatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaatatattaatcaatttaaa |
209 |
Q |
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| T |
9863175 |
ggctactcagtatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtaagggattcaagttagattaaatatattaatcaatttaaa |
9863274 |
T |
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| Q |
210 |
ta |
211 |
Q |
| |
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|| |
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| T |
9863275 |
ta |
9863276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 9867561 - 9867370
Alignment:
| Q |
20 |
aaaagcaaggatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatggctactcag |
119 |
Q |
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|||||||| |||||||||| | |||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| |
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| T |
9867561 |
aaaagcaaagatgggttttgtacaacttttggaagtggctactatgccagttattcaagtcttgcttgttagtgcattgggagcttttatggctactcag |
9867462 |
T |
|
| Q |
120 |
tatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaatatattaatcaatttaaata |
211 |
Q |
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| T |
9867461 |
tatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtatgtgattcaagataaattaaatatattaatcaatttaaata |
9867370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 9878967 - 9878758
Alignment:
| Q |
11 |
aagaatatcaaaagcaaggatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatg |
110 |
Q |
| |
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||||| ||||||||||| |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||| |
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| T |
9878967 |
aagaaaatcaaaagcaaagatgggttttgtacaacttttggaagtggcttctatgccagttattcaagtcttacttgttagtgcattgggggcttttatg |
9878868 |
T |
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| Q |
111 |
gctactcagtatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtaacggattcaagctagattaaata---tattaatcaattta |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||||||| |||||||||||||| |
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| T |
9878867 |
gctactcagtatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtatgtgcttcaaggtaaattaaatatagtattaatcaattta |
9878768 |
T |
|
| Q |
208 |
aataaatata |
217 |
Q |
| |
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|||||||||| |
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| T |
9878767 |
aataaatata |
9878758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 9899005 - 9898799
Alignment:
| Q |
11 |
aagaatatcaaaagcaaggatgggttttattcaacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatg |
110 |
Q |
| |
|
||||| |||||||| || |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9899005 |
aagaaaatcaaaagaaaagatgggttttgtacaacttttggaagtggcttctatgccagttattcaagtcttacttgttagtgcattgggagctttcatg |
9898906 |
T |
|
| Q |
111 |
gctactcagtatttcaacaatcttctttcaccagattttaggaaatccttgaacaaggtaacgga------ttcaagctagattaaatatattaatcaat |
204 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |
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| T |
9898905 |
gccactcagtatttcaataatcttctttcaccagattttaggaaatccttgaacaaggtaagtgattcaatttcaagctaaattaaatatattaatcaat |
9898806 |
T |
|
| Q |
205 |
ttaaata |
211 |
Q |
| |
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||||||| |
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|
| T |
9898805 |
ttaaata |
9898799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 7914127 - 7914250
Alignment:
| Q |
43 |
aacttttggaagtggcttcaatgccagttattcaagtcttacttattagtgcattgggagctttcatggctactcagtatttcaacaatcttctttcacc |
142 |
Q |
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|||||||||| ||||||| ||||||| ||| ||||| |||| |||||||||||| ||||||| ||||||||||| |||||||| |||||||||| | | |
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| T |
7914127 |
aacttttggatgtggcttttatgccagctatgaaagtcctactaattagtgcattgagagcttttatggctactcaatatttcaataatcttcttttagc |
7914226 |
T |
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| Q |
143 |
agattttaggaaatccttgaacaa |
166 |
Q |
| |
|
||| ||||| |||||||||||||| |
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| T |
7914227 |
agactttagaaaatccttgaacaa |
7914250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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