View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_5 (Length: 740)
Name: NF16056_low_5
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 21 - 502
Target Start/End: Complemental strand, 47436183 - 47435702
Alignment:
| Q |
21 |
aataatataatttacctccactgcactgtgtatataaaattgcttttatttctcattttattct--tggttgaactaatggttatgcatgttttgttaat |
118 |
Q |
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| T |
47436183 |
aataatataatttacctccactgcactgtgtatataaaattgcttttatttctcattttcttctattggttgaactaatggttatgcat--tttgttaat |
47436086 |
T |
|
| Q |
119 |
tgttttgtgtcttagattgaaatgttgacaggaaaggtaataaacgatgtagatgtagtgggttcctcctctaaatttggtcaaatgcctacacctgcat |
218 |
Q |
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| T |
47436085 |
tcttttgtgtcttagattgaaatgttgacaggaaaggtaataaacgatgtagatgtagtgggttcctcctctaaaattggtcaaatgcctacacctgcat |
47435986 |
T |
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| Q |
219 |
ttgaaataggaagtaatagtgacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435985 |
ttgaaataggaagtaatagtgacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagt |
47435886 |
T |
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| Q |
319 |
tgacaaagcaacgattgtagaacttgctgtggtttctatggaggaactcacaatgttaactcttgctggatcccctttatggatttccaccaatgacact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435885 |
tgacaaagcaacgattgtagaacttgctgtggtttctatggaggaactcacaatcttaactcttgctggatcccctttatggatttccaccaatgacact |
47435786 |
T |
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| Q |
419 |
gagattctaaatgaagctgaatacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435785 |
gagattctaaatgaagctgaatacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
47435702 |
T |
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