View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_53 (Length: 248)
Name: NF16056_low_53
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_53 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 14260678 - 14260436
Alignment:
| Q |
9 |
gcagaacctgtgttgtcagtcacacggaatgtgatgcgaaacctatatctaatccaaattaatcttaaataatttgtactttatatgtccaaattaagtt |
108 |
Q |
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| T |
14260678 |
gcagatcctgtgttgtcagtcacatggaatgtgatgcgaaacctatatccaatccaaattaatcttaaataatttgtactttatatgtccaaattaagtt |
14260579 |
T |
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| Q |
109 |
tattataagtaccaaactaatatt---nnnnnnnnnctaccttggagtaatcattaaaacatgcttattacacctttcacaatagtaagcaggactgtca |
205 |
Q |
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| T |
14260578 |
tattataagtaccaaattaatattaaaaaaaaaaaactaccttggagtaatcattaaaacatgcttattacatctttcacaatagtaagcaggactgtca |
14260479 |
T |
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| Q |
206 |
agaacaacgtgttcatgacaaacacaagataaaaaccaccaac |
248 |
Q |
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| T |
14260478 |
ggaacaacttgttcatgacaaatacaagataaaaaccaccaac |
14260436 |
T |
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Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 22135905 - 22136090
Alignment:
| Q |
63 |
caaattaatcttaaataatttgtactttatatgtccaaattaagtttattataagtaccaaactaatattnnnnnnnnnctaccttggagtaatcattaa |
162 |
Q |
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| T |
22135905 |
caaattaattataaacaattagtactctatatatcaaaattaaattcattataaataccaaactaatatacaaaaaagcccacctcagagtaatcattca |
22136004 |
T |
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| Q |
163 |
aacatgcttattacacctttcacaatagtaagcaggactgtcaagaacaacgtgttcatgacaaacacaagataaaaaccaccaac |
248 |
Q |
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| T |
22136005 |
aacatgcttattacacctttcacaatagtaggcaggactgtctggaacaacttgttcatgacaaacacaagataaataccaccaac |
22136090 |
T |
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