View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16056_low_56 (Length: 244)
Name: NF16056_low_56
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_56 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 56 - 244
Target Start/End: Complemental strand, 7819154 - 7818966
Alignment:
| Q |
56 |
ctgcagcaacaagcccacacaaatacacgcctagcgcatgcaaaaaccagaaacagagttgcaccctaaggtctggacacaacagaaaacacccactgcc |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7819154 |
ctgcagcaacaagcccacacaaatacacgcctagtgcatgcaaaaaccagaaacagagttgcaccctaaggtctggacacaacagaaaacacccactgcc |
7819055 |
T |
|
| Q |
156 |
cagcctgagataaagaactaaattcccatgccatctccataagcactccattgggtttcgattacacttatagaatagacaagtaagaa |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7819054 |
cagcctgagataaagaactaaattcccatgccatctccataagcactccattgggtttcgattacacttatagaatagacaagtaagaa |
7818966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 17091353 - 17091287
Alignment:
| Q |
56 |
ctgcagcaacaagcccacacaaatacacgcctagcgcatgcaaaaaccagaaacagagttgcaccct |
122 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
17091353 |
ctgcagcaacaagcacagacaaatacacgcctagaccacgcaaataccagaaacagagttgcaccct |
17091287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University