View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_62 (Length: 207)
Name: NF16056_low_62
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_62 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 2e-72; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 11165352 - 11165505
Alignment:
| Q |
49 |
ttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatct |
148 |
Q |
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| T |
11165352 |
ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatct |
11165451 |
T |
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| Q |
149 |
ggatcatttatggaatccctcatattgtatgcgtacctctctagttcatctctc |
202 |
Q |
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| T |
11165452 |
ggatcatttatggaatccctcatattgtatgcgtacctctctagtgcatttctc |
11165505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 11208364 - 11208554
Alignment:
| Q |
12 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
111 |
Q |
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| T |
11208364 |
cacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatctt |
11208463 |
T |
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| Q |
112 |
ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagttcatctctc |
202 |
Q |
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| T |
11208464 |
ttccttttcttttgacgaaagcttcgagctaacttctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctc |
11208554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 11274926 - 11275116
Alignment:
| Q |
12 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
111 |
Q |
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| T |
11274926 |
cacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcattattgatgtt |
11275025 |
T |
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| Q |
112 |
ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagttcatctctc |
202 |
Q |
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| T |
11275026 |
ttccttttcttttaatgaaagcttcgagataatatcgggatcatttatgaaatccctcatattgtatgcgtacttctctagtgcatttctc |
11275116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 11169542 - 11169732
Alignment:
| Q |
12 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
111 |
Q |
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| T |
11169542 |
cacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtt |
11169641 |
T |
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| Q |
112 |
ttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagttcatctctc |
202 |
Q |
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| T |
11169642 |
tgccttttcttttgacgaaatcttcgagctaatatccggatcatttatgaattccctcatattgtatgcgtacatctctagtgcatttctc |
11169732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 11155325 - 11155453
Alignment:
| Q |
74 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
173 |
Q |
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| T |
11155325 |
agccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagcatcaaactaatatccttatcatttatagcattcctcatgt |
11155424 |
T |
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| Q |
174 |
tgtatgcgtacctctctagttcatctctc |
202 |
Q |
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| T |
11155425 |
tgtatgcatacgtctctagtacaactctc |
11155453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 11195772 - 11195900
Alignment:
| Q |
74 |
agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
173 |
Q |
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| T |
11195772 |
agccacatgaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcatcaaactaatgtccttatcatttatcgcattcctcatgt |
11195871 |
T |
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| Q |
174 |
tgtatgcgtacctctctagttcatctctc |
202 |
Q |
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| T |
11195872 |
tgtatgcatacttctctaatacatctctc |
11195900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 11242198 - 11242016
Alignment:
| Q |
12 |
cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt |
111 |
Q |
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| T |
11242198 |
cacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccacattaacatcaagccatgtgaagaccaaat-aattgctttattaatctt |
11242100 |
T |
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| Q |
112 |
ttccttttct--tttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatattgtatgcgtacctctctagt |
193 |
Q |
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| T |
11242099 |
ttccttttttcgttttacgaaagcttcgagcaaatatccttatcatttatggcattccttatgttgtatgcatacttctttagt |
11242016 |
T |
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