View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16056_low_63 (Length: 203)
Name: NF16056_low_63
Description: NF16056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16056_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 40006120 - 40006291
Alignment:
| Q |
19 |
atggacgaggctacataatccaaggttcgaaagtaggcttccaacgaacctgacctcaacctatctcagcctcacttcaaagccttggtgaagcaaatca |
118 |
Q |
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| T |
40006120 |
atggatgaggctacataatccaaggttcgaaagtaggcttccaacgaacccgacctcaacctatctcagcctcacttcaaagccttggtgaagcaaatca |
40006219 |
T |
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| Q |
119 |
tcgaagattttcttcaacagaagcagcaacaaaaacagcaagagggagtttcccacaacaactatgcctatg |
190 |
Q |
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| T |
40006220 |
tcgaagattttcttcaacagaagcagcaacaaaaacagcaagagggagtttcccacaacaactatgcctatg |
40006291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 40005882 - 40005799
Alignment:
| Q |
23 |
acgaggctacataatccaaggttcgaaagtaggcttccaacgaacctgacctcaacctatctcagcctcacttcaaagccttggtgaagcaaa |
115 |
Q |
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| T |
40005882 |
acgaggctacagaatccaaggttcgaaagtagccttacaacgaactcggcc---------ctcagcctcacttcaaagccttggtgaagcaaa |
40005799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 40006020 - 40006068
Alignment:
| Q |
72 |
cctcaacctatctcagcctcacttcaaagccttggtgaagcaaatcatc |
120 |
Q |
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| T |
40006020 |
cctcaacctatctcaacttcacttcaaagccttggtgaatcaaatcatc |
40006068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 42150563 - 42150643
Alignment:
| Q |
76 |
aacctatctcagcctcacttcaaagccttggtgaagcaaatcatcgaagattttcttcaacagaagcagcaacaaaaacag |
156 |
Q |
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| T |
42150563 |
aacctatctcagcctcccttcaaagccttcgtcaaacaaatcatagaagattttcttctacagaagcaacaagaacaacag |
42150643 |
T |
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