View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16057_high_2 (Length: 359)
Name: NF16057_high_2
Description: NF16057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16057_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 206 - 338
Target Start/End: Original strand, 31298995 - 31299127
Alignment:
| Q |
206 |
aacaaaaatatatttataataattaacccttaaatctctccctccctctctactacctttgattcagatctcttcaccaaccacctaaaacgaaactttg |
305 |
Q |
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| T |
31298995 |
aacaaaaatatatttataataattaacccttaaatctctccctccctctctactacctttgattcagatctcttcaccaaccacctaaaacgaaactttg |
31299094 |
T |
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| Q |
306 |
cgcgaaaaaacatcactctcccttttcatttca |
338 |
Q |
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| T |
31299095 |
cgcgaaaaaacatcactctcccttttcatttca |
31299127 |
T |
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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 31298835 - 31298903
Alignment:
| Q |
14 |
taaatatagtttaattcattagttcattgtatata-tctaattcattagttcgttgtacaaaagaaaac |
81 |
Q |
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| T |
31298835 |
taaatatagtttaattcattagttcattatatgtagtctaattaattagttcattgtacaaaagaaaac |
31298903 |
T |
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