View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16057_high_6 (Length: 253)

Name: NF16057_high_6
Description: NF16057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16057_high_6
NF16057_high_6
[»] chr1 (6 HSPs)
chr1 (18-212)||(46428898-46429097)
chr1 (46-178)||(46621621-46621754)
chr1 (46-178)||(46627354-46627487)
chr1 (182-253)||(46621539-46621601)
chr1 (182-212)||(46627304-46627334)
chr1 (130-171)||(46430346-46430387)
[»] chr7 (2 HSPs)
chr7 (46-179)||(37147384-37147518)
chr7 (182-253)||(37147537-37147599)
[»] chr5 (2 HSPs)
chr5 (128-178)||(38750028-38750078)
chr5 (128-178)||(38849024-38849074)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 46428898 - 46429097
Alignment:
Q  18 atatgagcatgctgaaagagnnnnnnnngttttagttaacttttagaagtcccacatt-tgtatttcatgaaagaaacaagtctttataagcttctgaca 116  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||||    
T  46428898 atatgagcatgctgaaagagaaaaaaaagttttagttaacttttagaagtcccacatcgtgtatttcatgaaagaaataagtctttataaccttctgaca 46428997  T
Q  117 aggctgtcaacttgctgagttgggtaaccccaacttgtaacccaagtgggggc----atcaaggtggaattgccaggttgggttggtggctgcaccatgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||||| |||||||||||||||||||||||||||    
T  46428998 aggctgtcaacttgctgagttgggtaaccccaacttgtaacccaactgggggcatcaatcaaggtggaattgtcaggttgggttggtggctgcaccatgc 46429097  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 46621754 - 46621621
Alignment:
Q  46 gttttagttaacttttagaagtcccacattt-gtatttcatgaaagaaacaagtctttataagcttctgacaaggctgtcaacttgctgagttgggtaac 144  Q
    |||||||||||| ||||||||||||||||   | ||||||||| ||||| |||||| ||||| |||||| |||||||| || ||||| ||||||||||||    
T  46621754 gttttagttaacatttagaagtcccacatcgagaatttcatgatagaaataagtctatataaacttctggcaaggctgccagcttgccgagttgggtaac 46621655  T
Q  145 cccaacttgtaacccaagtgggggcatcaaggtg 178  Q
      ||||||||||||||||||||||||| ||||||    
T  46621654 ttcaacttgtaacccaagtgggggcatgaaggtg 46621621  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 46627487 - 46627354
Alignment:
Q  46 gttttagttaacttttagaagtcccacattt-gtatttcatgaaagaaacaagtctttataagcttctgacaaggctgtcaacttgctgagttgggtaac 144  Q
    |||||||||||| ||||||||||||||||   ||||||||||||||||| || ||| ||||| ||||||||||||||| || ||||| ||| ||||||||    
T  46627487 gttttagttaacatttagaagtcccacatcgagtatttcatgaaagaaataattctatataatcttctgacaaggctgccagcttgccgagctgggtaac 46627388  T
Q  145 cccaacttgtaacccaagtgggggcatcaaggtg 178  Q
      ||||||||||| ||||||||||||| ||||||    
T  46627387 ttcaacttgtaactcaagtgggggcatgaaggtg 46627354  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 46621601 - 46621539
Alignment:
Q  182 ttgccaggttgggttggtggctgcaccatgcatgctggcctgcccagcccactccaagttgagagttggcca 253  Q
    |||||||||||||||||||||||||||||||    |||||||     |||||||||||||||||||||||||    
T  46621601 ttgccaggttgggttggtggctgcaccatgc----tggcctg-----cccactccaagttgagagttggcca 46621539  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 212
Target Start/End: Complemental strand, 46627334 - 46627304
Alignment:
Q  182 ttgccaggttgggttggtggctgcaccatgc 212  Q
    |||||||||||||||||||||||||||||||    
T  46627334 ttgccaggttgggttggtggctgcaccatgc 46627304  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 46430346 - 46430387
Alignment:
Q  130 gctgagttgggtaaccccaacttgtaacccaagtgggggcat 171  Q
    ||||||||||||||  ||||| ||||||||||||||||||||    
T  46430346 gctgagttgggtaataccaacctgtaacccaagtgggggcat 46430387  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 37147384 - 37147518
Alignment:
Q  46 gttttagttaacttttagaagtcccacatt-tgtatttcatgaaagaaacaagtctttataagcttctgacaaggctgtcaacttgctgagttgggtaac 144  Q
    ||||||||| || |||| |||||||||||  |||||||||| |||||||| ||||||||||| ||| |||||||||| ||| ||||| ||||||| ||||    
T  37147384 gttttagtttacatttataagtcccacatcgtgtatttcataaaagaaactagtctttataatcttatgacaaggctatcagcttgccgagttggataac 37147483  T
Q  145 cccaacttgtaacccaagtgggggcatcaaggtgg 179  Q
      |||||||||||||||||||||||| ||| ||||    
T  37147484 atcaacttgtaacccaagtgggggcaacaatgtgg 37147518  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 37147537 - 37147599
Alignment:
Q  182 ttgccaggttgggttggtggctgcaccatgcatgctggcctgcccagcccactccaagttgagagttggcca 253  Q
    ||||||||||||||| ||||||||||||||    |||||||     ||||||||||||||||||||||||||    
T  37147537 ttgccaggttgggttagtggctgcaccatg----ctggcct-----gcccactccaagttgagagttggcca 37147599  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 38750028 - 38750078
Alignment:
Q  128 ttgctgagttgggtaaccccaacttgtaacccaagtgggggcatcaaggtg 178  Q
    |||||||||||  |||| ||||||||||||||| ||||| |||||||||||    
T  38750028 ttgctgagttgaataacaccaacttgtaacccatgtgggagcatcaaggtg 38750078  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 38849074 - 38849024
Alignment:
Q  128 ttgctgagttgggtaaccccaacttgtaacccaagtgggggcatcaaggtg 178  Q
    |||||||||||  |||| ||||||||||||||| ||||| |||||||||||    
T  38849074 ttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtg 38849024  T

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