View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16057_low_5 (Length: 322)
Name: NF16057_low_5
Description: NF16057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16057_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 58 - 234
Target Start/End: Complemental strand, 20410595 - 20410419
Alignment:
| Q |
58 |
ggagttctataatcaaaacctttaggtggaagcaacattgtgtatgtctctgtcaccatatcaagcgacacaatgaccaactcctcagaagttagaatgg |
157 |
Q |
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| T |
20410595 |
ggagttctataatcaaaaccttgatgtggaagcaacattgtgtatgtctctgtcaccatatcaagcgacacaatgaccaactcctcagaagttagcatgg |
20410496 |
T |
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| Q |
158 |
catattcataatttacataatgttcataatcatcataaggaagaatgatattactaagggctaaccaattaagacta |
234 |
Q |
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| T |
20410495 |
catattaataatttacataattttcataatcatcatcaggaagaatgaaattactaagggctaaccaattaagacta |
20410419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 20433358 - 20433287
Alignment:
| Q |
236 |
ttcttttctatttcctattgtttttgttttctgtcttaaataaatcttgag-aaaaaatgacaattgtgctt |
306 |
Q |
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| T |
20433358 |
ttcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgacaattgtgctt |
20433287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 20439831 - 20439760
Alignment:
| Q |
236 |
ttcttttctatttcctattgtttttgttttctgtcttaaataaatcttgag-aaaaaatgacaattgtgctt |
306 |
Q |
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| T |
20439831 |
ttcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgacaattgtgctt |
20439760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 20445558 - 20445487
Alignment:
| Q |
236 |
ttcttttctatttcctattgtttttgttttctgtcttaaataaatcttgag-aaaaaatgacaattgtgctt |
306 |
Q |
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| T |
20445558 |
ttcttttctatttcctaatgtttttgttttctgtcttaaataaatctttagaaaaaaatgacaattgtgctt |
20445487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 20410393 - 20410326
Alignment:
| Q |
236 |
ttcttttctatttcctattgtttttgttttctgtcttaaataaatcttgagaaaaaatgacaattgtgctt |
306 |
Q |
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| T |
20410393 |
ttcttttctatttcctattgtttttgttttctgtcataaataaatcttgag---aaatgacaattgtgctt |
20410326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 20427138 - 20427070
Alignment:
| Q |
239 |
ttttctatttcctattgtttttgttttctgtcttaaataaatcttgagaaaaa-atgacaattgtgctt |
306 |
Q |
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| T |
20427138 |
ttttctatttcctaatgtttttgttttctgtcttaaataaaactttagaaaaacatgacaattgtgctt |
20427070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 20452747 - 20452698
Alignment:
| Q |
58 |
ggagttctataatcaaaacctttaggtggaagcaacattgtgtatgtctc |
107 |
Q |
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| T |
20452747 |
ggagttctataatcaaaaccttgatgtggaagcaacattgtgtatgtctc |
20452698 |
T |
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