View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16057_low_6 (Length: 266)
Name: NF16057_low_6
Description: NF16057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16057_low_6 |
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| [»] scaffold0496 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 46429219 - 46429360
Alignment:
| Q |
102 |
tctattttcatgatcatcagttaaagaattattcattggaccatatttacataatcacaagaatgatatcgaatctttcaagtagaacaatgtaagttga |
201 |
Q |
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| T |
46429219 |
tctattttcatgatcatcagttaaagaattattcattggaccatatttacataatcacaagaatgatatcgaatctttcaagtagaacaatgtaagttga |
46429318 |
T |
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| Q |
202 |
tggaaaagaaaactacttactgtgagctaggcaattttaatg |
243 |
Q |
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| T |
46429319 |
tggaaaagaaaactacttactgtgagctaggcaattttaatg |
46429360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 46425927 - 46425971
Alignment:
| Q |
181 |
aagtagaacaatgtaagttgatggaaaagaaaactacttactgtg |
225 |
Q |
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| T |
46425927 |
aagtagaacaatgaaagttgatggaaaagaagactactcactgtg |
46425971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 98
Target Start/End: Original strand, 46429166 - 46429196
Alignment:
| Q |
68 |
ttcaactgtcatacatggtagtttttgctaa |
98 |
Q |
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| T |
46429166 |
ttcaactgtcatacatggtagtttttgctaa |
46429196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46621557 - 46621523
Alignment:
| Q |
1 |
ccaagttgagagttggccaatgggacctaggcgaa |
35 |
Q |
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| T |
46621557 |
ccaagttgagagttggccaatgtgacctaggcgaa |
46621523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37147581 - 37147615
Alignment:
| Q |
1 |
ccaagttgagagttggccaatgggacctaggcgaa |
35 |
Q |
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| T |
37147581 |
ccaagttgagagttggccaatgggacctaggcgaa |
37147615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12334 - 12300
Alignment:
| Q |
1 |
ccaagttgagagttggccaatgggacctaggcgaa |
35 |
Q |
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| T |
12334 |
ccaagttgagagttggtcaatgggacctaggcgaa |
12300 |
T |
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