View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16057_low_9 (Length: 229)
Name: NF16057_low_9
Description: NF16057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16057_low_9 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 240779 - 240551
Alignment:
| Q |
1 |
ttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattgcaatcttccgagtctca |
100 |
Q |
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| T |
240779 |
ttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattgcaatcttccgagtctca |
240680 |
T |
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| Q |
101 |
gttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataagagtgtaacacctaaatt |
200 |
Q |
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| T |
240679 |
gttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataagagtgtaacacctaaatg |
240580 |
T |
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| Q |
201 |
tgaaagcaaagtaaaatggatttaatttt |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
240579 |
tgaaagcaaagtaaaatggatttaatttt |
240551 |
T |
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