View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16058_high_1 (Length: 820)

Name: NF16058_high_1
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16058_high_1
NF16058_high_1
[»] chr4 (4 HSPs)
chr4 (1-802)||(9909107-9909907)
chr4 (408-446)||(44626192-44626230)
chr4 (371-440)||(26066409-26066478)
chr4 (397-446)||(30206533-30206582)
[»] chr7 (4 HSPs)
chr7 (506-675)||(27091222-27091391)
chr7 (506-675)||(27186910-27187079)
chr7 (371-434)||(40364619-40364682)
chr7 (372-434)||(40324688-40324750)
[»] chr2 (2 HSPs)
chr2 (394-445)||(4860270-4860320)
chr2 (372-446)||(4860275-4860348)
[»] chr5 (2 HSPs)
chr5 (408-445)||(8309860-8309897)
chr5 (408-445)||(28351016-28351053)
[»] chr1 (3 HSPs)
chr1 (394-446)||(39514968-39515020)
chr1 (411-445)||(46508175-46508209)
chr1 (408-437)||(14231118-14231147)
[»] chr3 (1 HSPs)
chr3 (371-438)||(29290817-29290884)
[»] chr8 (2 HSPs)
chr8 (408-446)||(10107348-10107386)
chr8 (373-438)||(27789320-27789385)


Alignment Details
Target: chr4 (Bit Score: 738; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 1 - 802
Target Start/End: Original strand, 9909107 - 9909907
Alignment:
Q  1 acaagatccatgatgaagaaacccaaaagtttattggaaaatgtttggcaaatgtctcagagaggttgtcagcaaaagagctcttgatggaccctttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9909107 acaagatccatgatgaagaaacccaaaagtttattggaaaatgtttggcaaatgtctcagagaggttgtcagcaaaagagctcttgatggaccctttttt 9909206  T
Q  101 agctacggcccatcatgactcaccattgcctagtccaactttagttagcaaacatactcaacaaatcaatttcaatgcaacaattgccaaagaacaacct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9909207 agctacggcccatcatgactcaccattgcctagtccaactttagttagcaaacatactcaacaaatcaatttcaatgcaacaattgccaaagaacaacct 9909306  T
Q  201 ccattgaagaacgcaacaaacagcacacacatgacaatcacagggactatcaatgaagaggatggcactgttttccttaaagtcaaaatttctaacaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9909307 ccattgaagaacgcaacaaacagcacacacatgacaatcacagggactatcaatgaagaggatggcactgttttccttaaagtcaaaatttctaacaaaa 9909406  T
Q  301 atggtattgcatagtttcagtacaagatactactccctccgattattattataaaccaagttttactctgtagattcattgaaaaactgataaatctggt 400  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| |    
T  9909407 atggtattgcatactttcagtacaagatactactccctccgattattattataaaccaagttttactttgcagattcattgaataactgataaatctgat 9909506  T
Q  401 atatatcatagaccagatacattagttattcaatgaatctgaaaaacggggttttgttataataatgacctggcccaattttggggttgctaaacaaatg 500  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||||||||||||||| ||||| | | |||| ||||||||||||||    
T  9909507 atatatcatagaccagatacattagatattcaatgaatctgaaaagc-aggttttgttataataatgacccggcccgaatatgggtttgctaaacaaatg 9909605  T
Q  501 tatacttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9909606 tatacttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttg 9909705  T
Q  601 aaattagtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatggagggattgttgcagttctaagtatca 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9909706 aaattagtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatggagggattgttgcagttctaagtatca 9909805  T
Q  701 aagacaacatagttttatctatggtgaagaggatgatcatgatattagcaaccaccatcctttcttctcaccaccttctcgctcttcctcgcatggttct 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9909806 aagacaacatagttttatctatggtgaagaggatgatcatgatattagtaaccaccatcctttcttctcaccaccttctcgctcttcctcgcatggttct 9909905  T
Q  801 ct 802  Q
    ||    
T  9909906 ct 9909907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 446
Target Start/End: Complemental strand, 44626230 - 44626192
Alignment:
Q  408 atagaccagatacattagttattcaatgaatctgaaaaa 446  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  44626230 atagactagatacattagttattcaatgtatctgaaaaa 44626192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 26066478 - 26066409
Alignment:
Q  371 tagattcattgaaaaactgataaatctggtatatatcatagaccagatacattagttattcaatgaatct 440  Q
    |||||||||| || |||||||  ||||||| |||||  |||||| ||||||| | |||||||||||||||    
T  26066478 tagattcattaaataactgatgtatctggtctatattctagaccggatacatcaattattcaatgaatct 26066409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 30206533 - 30206582
Alignment:
Q  397 tggtatatatcatagaccagatacattagttattcaatgaatctgaaaaa 446  Q
    |||| ||||| ||| ||||||||||| | |||||||||||||||||||||    
T  30206533 tggtctatattataaaccagatacatcaattattcaatgaatctgaaaaa 30206582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 506 - 675
Target Start/End: Complemental strand, 27091391 - 27091222
Alignment:
Q  506 ttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaatt 605  Q
    ||||||||||||||| || ||  |||||| ||| |||||||| || ||||| |||||||| ||| | || ||||  ||||||||  |||||||||||||     
T  27091391 ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc 27091292  T
Q  606 agtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatgga 675  Q
    | | ||||||||||| || |||||||||  ||||| ||  | |||||||||||| || ||||||| ||||    
T  27091291 aatcacttggaaccattaaagattgctgcaatgatagataatgagatatcaactttatttccaacttgga 27091222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 506 - 675
Target Start/End: Original strand, 27186910 - 27187079
Alignment:
Q  506 ttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaatt 605  Q
    ||||||||||||||| || ||  |||||| ||| |||||||| || ||||| |||||||| ||| | || ||||  ||||||||  |||||||||||||     
T  27186910 ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc 27187009  T
Q  606 agtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatgga 675  Q
    | | ||||||||||| || |||||||||  ||||| ||  | |||||||||||| || ||||||| ||||    
T  27187010 aatcacttggaaccattaaagattgctgcaatgatagataatgagatatcaactttatttccaacttgga 27187079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 40364619 - 40364682
Alignment:
Q  371 tagattcattgaaaaactgataaatctggtatatatcatagaccagatacattagttattcaat 434  Q
    |||||||||||||||||||||| || |||| ||||| ||||| || |||||| | |||||||||    
T  40364619 tagattcattgaaaaactgatatatttggtttatattatagatcaaatacatcaattattcaat 40364682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 372 - 434
Target Start/End: Original strand, 40324688 - 40324750
Alignment:
Q  372 agattcattgaaaaactgataaatctggtatatatcatagaccagatacattagttattcaat 434  Q
    ||||||||||||  | |||| |||||||| ||||  ||||||||||||||| |||||||||||    
T  40324688 agattcattgaattattgattaatctggtttataatatagaccagatacatcagttattcaat 40324750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 394 - 445
Target Start/End: Complemental strand, 4860320 - 4860270
Alignment:
Q  394 atctggtatatatcatagaccagatacattagttattcaatgaatctgaaaa 445  Q
    ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||    
T  4860320 atctggtttatat-atagaccagatacatcagttattcaatgaatctgaaaa 4860270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 372 - 446
Target Start/End: Original strand, 4860275 - 4860348
Alignment:
Q  372 agattcattgaaaaactgataaatctggtatatatcatagaccagatacattagttattcaatgaatctgaaaaa 446  Q
    |||||||||||| |||||||  ||||||| ||||| ||| ||||||||||||||| ||| ||| ||||| |||||    
T  4860275 agattcattgaataactgatgtatctggtctatat-ataaaccagatacattagtcatttaataaatctaaaaaa 4860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 445
Target Start/End: Original strand, 8309860 - 8309897
Alignment:
Q  408 atagaccagatacattagttattcaatgaatctgaaaa 445  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  8309860 atagaccaggtacattagttattcaatgaatctgaaaa 8309897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 445
Target Start/End: Original strand, 28351016 - 28351053
Alignment:
Q  408 atagaccagatacattagttattcaatgaatctgaaaa 445  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  28351016 atagaccggatacattagttattcaatgaatctaaaaa 28351053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 39515020 - 39514968
Alignment:
Q  394 atctggtatatatcatagaccagatacattagttattcaatgaatctgaaaaa 446  Q
    ||||| ||||||| ||| |||||||||||||||||||||| ||| ||||||||    
T  39515020 atctgatatatattataaaccagatacattagttattcaacgaacctgaaaaa 39514968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 445
Target Start/End: Complemental strand, 46508209 - 46508175
Alignment:
Q  411 gaccagatacattagttattcaatgaatctgaaaa 445  Q
    |||||||||||| ||||||||||||||||||||||    
T  46508209 gaccagatacataagttattcaatgaatctgaaaa 46508175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 437
Target Start/End: Original strand, 14231118 - 14231147
Alignment:
Q  408 atagaccagatacattagttattcaatgaa 437  Q
    ||||||||||||||||||||||||||||||    
T  14231118 atagaccagatacattagttattcaatgaa 14231147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 29290817 - 29290884
Alignment:
Q  371 tagattcattgaaaaactgataaatctggtatatatcatagaccagatacattagttattcaatgaat 438  Q
    ||||||||||||| |||||||  ||||| | ||||| |||||| | |||||| |||||||||||||||    
T  29290817 tagattcattgaacaactgatgtatctgatctatattatagactaaatacataagttattcaatgaat 29290884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 446
Target Start/End: Original strand, 10107348 - 10107386
Alignment:
Q  408 atagaccagatacattagttattcaatgaatctgaaaaa 446  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  10107348 atagaccagatacatcagttattcaatgaaactgaaaaa 10107386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 438
Target Start/End: Original strand, 27789320 - 27789385
Alignment:
Q  373 gattcattgaaaaactgataaatctggtatatatcatagaccagatacattagttattcaatgaat 438  Q
    ||||||||||| || ||||  ||||||||||||  || ||||| |||||| |||||||||||||||    
T  27789320 gattcattgaataattgatgtatctggtatataatattgaccaaatacatcagttattcaatgaat 27789385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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