View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_high_13 (Length: 353)
Name: NF16058_high_13
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 49591722 - 49591406
Alignment:
| Q |
19 |
atcaggtactacatattaatattatggttctaaactgtagttgtagtcgtggttgccgttgcgatgtgaaccttaatattgcgccaaaatgctaacaaat |
118 |
Q |
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| T |
49591722 |
atcaggtactacatattaatattatggttctaaactgtagttgtagtcgtggttgcagttgcgatgtgaaccttaatattgcgccaaaatgctaacaaat |
49591623 |
T |
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| Q |
119 |
gaggtagccacttcaactagtggagttcgtaactggtcaatatgtcgatccatcaactgcgatcagttctcagttatttggttcaattgtggtctaatag |
218 |
Q |
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| T |
49591622 |
gaggtagccacttcaactagtggagttcgtaactggtcaatatgtcgatccatcaactgcgatcagttctcagttatttggttcaattgtggtctaatag |
49591523 |
T |
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| Q |
219 |
attgaatcaacttaaccatgaccaaaggtctagcaagtttgatatctggttttgtttttaaaacatttatattaacatataactcttgccttattaaaaa |
318 |
Q |
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| T |
49591522 |
attgaatcaacttaaccatgaccaaaggtctcacaagtttgatatctggttttgtttttaaaacatttatattaacatataactcttgccttattaaaaa |
49591423 |
T |
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| Q |
319 |
cagataaaaaatgatat |
335 |
Q |
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| T |
49591422 |
cagataaaaaatgatat |
49591406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 7236554 - 7236617
Alignment:
| Q |
273 |
tttttaaaacatttatattaacatataactcttgccttat-taaaaacagataaaaaatgatat |
335 |
Q |
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| T |
7236554 |
tttttaaaacatttatattaacatataactcttatcttataaaaaaacagatgaaaaatgatat |
7236617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 7236451 - 7236512
Alignment:
| Q |
131 |
tcaactagtggagttcgtaactggtcaatatgtcgatccatcaactgcgatcagttctcagt |
192 |
Q |
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| T |
7236451 |
tcaactagttgagttcgtaactggtcaataagtagattgaccaaccgcgatcaattctcagt |
7236512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 7236240 - 7236272
Alignment:
| Q |
80 |
cgatgtgaaccttaatattgcgccaaaatgcta |
112 |
Q |
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| T |
7236240 |
cgatgtgaaccttaatattacgccaaaatgcta |
7236272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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