View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16058_high_17 (Length: 342)
Name: NF16058_high_17
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_high_17 |
 | |
|
| [»] chr5 (9 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 34233010 - 34233339
Alignment:
| Q |
13 |
caaagggatcaatatgacattggtaaaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatatagga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34233010 |
caaagggatcaatatgacattggtaaaaattccaataaactttgtaagtattgatttctcaagaaacaagtttaatggaggaattccaaatgatatagga |
34233109 |
T |
|
| Q |
113 |
gaacttcacgcactcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
34233110 |
gaacttcacgcactcaaagggcttaacctttcacataacagactcactggtcctattcctcaatccatacaaaacttgacaaacttggaatcgttggatc |
34233209 |
T |
|
| Q |
213 |
tctcgtcaaatattctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaat |
312 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34233210 |
tctcgtcaaatatgctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaat |
34233309 |
T |
|
| Q |
313 |
acctcaaggaaagcaattcaatacatttac |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34233310 |
acctcaaggaaagcaattcaatacatttac |
34233339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 38 - 342
Target Start/End: Original strand, 34240808 - 34241112
Alignment:
| Q |
38 |
aaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggagaacttcacgcactcaaagggctta |
137 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34240808 |
aaaattccaacaatgtttgtaagtattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggagaacttcacgcactcaaagggctta |
34240907 |
T |
|
| Q |
138 |
acctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatctctcgtcaaatattctcactggtat |
237 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
34240908 |
acctttcacataacagactcactggtcctattcctcaatccatacaaaacttgacaaacttggaatcgttggatctctcgtcaaatatgctcactggtat |
34241007 |
T |
|
| Q |
238 |
gattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaagcaattcaataca |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34241008 |
gattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaagcaattcaataca |
34241107 |
T |
|
| Q |
338 |
tttac |
342 |
Q |
| |
|
||||| |
|
|
| T |
34241108 |
tttac |
34241112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 38 - 342
Target Start/End: Original strand, 41713800 - 41714104
Alignment:
| Q |
38 |
aaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggagaacttcacgcactcaaagggctta |
137 |
Q |
| |
|
|||||||||| || ||||| || ||||||||| |||||||| || ||| |||| | |||||| ||| ||| ||||| ||||| | ||||||||||||| |
|
|
| T |
41713800 |
aaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggagattccagatgttattggagagcttcatgatctcaaagggctta |
41713899 |
T |
|
| Q |
138 |
acctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatctctcgtcaaatattctcactggtat |
237 |
Q |
| |
|
|||||||| |||||| ||| ||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41713900 |
acctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatgctcactggtcg |
41713999 |
T |
|
| Q |
238 |
gattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaagcaattcaataca |
337 |
Q |
| |
|
|||||||| | | |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41714000 |
gattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaatacctcaaggaaagcagttcaataca |
41714099 |
T |
|
| Q |
338 |
tttac |
342 |
Q |
| |
|
||||| |
|
|
| T |
41714100 |
tttac |
41714104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 42117604 - 42117298
Alignment:
| Q |
14 |
aaagggatcaatatgacattggtaaaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggag |
113 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||| | ||||||| ||||||||| |||| |||||| ||| | |||| |||||||||| ||| |||| |
|
|
| T |
42117604 |
aaagggagcaaaatgacattggtgaaaattccaaacatttttgtaattattgatttgtcaaaaaacaaatttgagggagagattccaaatgctattggag |
42117505 |
T |
|
| Q |
114 |
aacttcacgcactcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatct |
213 |
Q |
| |
|
| || || ||||||||||||||||||||||| ||||||||||| || |||| |||||| ||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
42117504 |
acctccatgcactcaaagggcttaacctttcccataacagactcaccggtcatattcccaaatccatgggaaacttgtcaaacttggaatcattggatct |
42117405 |
T |
|
| Q |
214 |
ctcgtcaaatattctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaata |
313 |
Q |
| |
|
|||||||||||| || || |||||||| |||||||||||||||||||| || |||| |||||||| ||||||||||||||||||| |||||| ||||| |
|
|
| T |
42117404 |
ctcgtcaaatatgcttaccggtatgatccctgcagaattaaccaatttagactttcttcaagtcttgaatctttccaataaccatctagtgggaaaaata |
42117305 |
T |
|
| Q |
314 |
cctcaag |
320 |
Q |
| |
|
||||||| |
|
|
| T |
42117304 |
cctcaag |
42117298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 38 - 342
Target Start/End: Complemental strand, 42123328 - 42123024
Alignment:
| Q |
38 |
aaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggagaacttcacgcactcaaagggctta |
137 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||| | ||||||||||| ||| | |||| |||||||||| ||| ||| | || || ||||||| |||||||| |
|
|
| T |
42123328 |
aaaattccaaaaaagtttgtaagtattgatatgtcaagaaacaaatttgaaggagagattccaaatgctattggaaagctacatgcactcatagggctta |
42123229 |
T |
|
| Q |
138 |
acctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatctctcgtcaaatattctcactggtat |
237 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||| ||||| || | ||||| |||||||||||| ||||||||||| |||||||| ||||||| | | |
|
|
| T |
42123228 |
acctttcccataacagactcaatggtcctattccccaatcaattggatacttgtcaaacttggaatggttggatctctcatcaaatatgctcactgatgt |
42123129 |
T |
|
| Q |
238 |
gattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaagcaattcaataca |
337 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42123128 |
gattcctgcagaactaaccaatttgggctttcttgaagtcttagatatttcaaataaccatcttgtgggagaaatacctcaaggaaagcagttcaataca |
42123029 |
T |
|
| Q |
338 |
tttac |
342 |
Q |
| |
|
||||| |
|
|
| T |
42123028 |
tttac |
42123024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 42128746 - 42128418
Alignment:
| Q |
14 |
aaagggatcaatatgacattggtaaaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggag |
113 |
Q |
| |
|
||||||| ||| | ||||||||| |||||||||| | |||||||| ||||||||| ||||||||||| ||| | |||| |||||||||||| | || | |
|
|
| T |
42128746 |
aaagggaacaaaaggacattggtgaaaattccaaatatctttgtaattattgatttgtcaagaaacaaatttgaaggagatattccaaatgattttggtg |
42128647 |
T |
|
| Q |
114 |
aacttcacgcactcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatct |
213 |
Q |
| |
|
| ||||| ||||| | ||| || |||||||| ||||||| ||| | ||| |||||||| ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
42128646 |
agcttcatgcactaataggactcaacctttcccataacaaactcattggccctattccaaaatccatgggaaacttgacaaacttggaatggttggatct |
42128547 |
T |
|
| Q |
214 |
ctcgtcaaatattctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaata |
313 |
Q |
| |
|
||| |||||| | ||||||| | |||||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
42128546 |
ctcatcaaatgtgctcactgatgtgattcctgcagaattaagcaatttgggttttcttgaagtcttagatctttcaaataaccatctagtgggagaaata |
42128447 |
T |
|
| Q |
314 |
cctcaaggaaagcaattcaatacatttac |
342 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
42128446 |
cctcaaggaccgcaattcaatacatttac |
42128418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 116 - 340
Target Start/End: Original strand, 41572339 - 41572563
Alignment:
| Q |
116 |
cttcacgcactcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatctct |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||||||| || ||||||| ||||| |||||||||||||||| | |
|
|
| T |
41572339 |
cttcactcactcaaagggcttaacctttcccataacagactcaccggtcctattcctcaatccgtaggaaacttgtcaaacatggaatcattggatcttt |
41572438 |
T |
|
| Q |
216 |
cgtcaaatattctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacc |
315 |
Q |
| |
|
|||||||||| ||||||||| | |||||| ||||||||| |||| ||||| || ||| ||| ||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
41572439 |
cgtcaaatatactcactggtgtaattccttcagaattaatcaatctgaacggtattggagtattgaatctttctcataaccatctagtgggagaaatacc |
41572538 |
T |
|
| Q |
316 |
tcaaggaaagcaattcaatacattt |
340 |
Q |
| |
|
||||||||| || |||||||||||| |
|
|
| T |
41572539 |
tcaaggaaaacagttcaatacattt |
41572563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 116 - 340
Target Start/End: Original strand, 41617978 - 41618202
Alignment:
| Q |
116 |
cttcacgcactcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatctct |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||||||| || ||||||| ||||| |||||||||||||||| | |
|
|
| T |
41617978 |
cttcactcactcaaagggcttaacctttcccataacagactcaccggtcctattcctcaatccgtaggaaacttgtcaaacatggaatcattggatcttt |
41618077 |
T |
|
| Q |
216 |
cgtcaaatattctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacc |
315 |
Q |
| |
|
|||||||||| ||||||||| | |||||| ||||||||| |||| ||||| || ||| ||| ||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
41618078 |
cgtcaaatatactcactggtgtaattccttcagaattaatcaatctgaacggtattggagtattgaatctttctcataaccatctagtgggagaaatacc |
41618177 |
T |
|
| Q |
316 |
tcaaggaaagcaattcaatacattt |
340 |
Q |
| |
|
||||||||| || |||||||||||| |
|
|
| T |
41618178 |
tcaaggaaaacagttcaatacattt |
41618202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 261
Target Start/End: Complemental strand, 41444179 - 41443970
Alignment:
| Q |
52 |
ctttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggagaacttcacgcactcaaagggcttaacctttcacataac |
151 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| ||| | |||| |||||||||| ||| || || ||||| ||| ||| ||| || |||||||| || || |
|
|
| T |
41444179 |
ctttgtaagtattgatttttcaggaaacaaatttgaaggagacattccaaatgttattggtgagcttcatgcaatcataggactcaacctttcccacaat |
41444080 |
T |
|
| Q |
152 |
agactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatctctcgtcaaatattctcactggtatgattcctgcagaat |
251 |
Q |
| |
|
| ||| |||||| | |||||||||||| | ||| |||| |||| | |||||| |||||||||| |||||||| |||||||||| ||||||| |||| | |
|
|
| T |
41444079 |
aaacttactggtgcgattcctcaatcctttggaaatttgataaacatcgaatcaatggatctctcctcaaatatgctcactggtaggattcctacagagt |
41443980 |
T |
|
| Q |
252 |
taaccaattt |
261 |
Q |
| |
|
|||||||||| |
|
|
| T |
41443979 |
taaccaattt |
41443970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 11118015 - 11117687
Alignment:
| Q |
14 |
aaagggatcaatatgacattggtaaaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggag |
113 |
Q |
| |
|
||||||| ||| |||||| |||| |||||||||||||| || |||| ||||||||| ||||||||||| ||| | |||| ||| |||||| ||| |||| |
|
|
| T |
11118015 |
aaagggaacaaaatgacactggtgaaaattccaataaagttagtaagtattgatttgtcaagaaacaaatttgaaggagagattacaaatgctattggag |
11117916 |
T |
|
| Q |
114 |
aacttcacgcactcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatct |
213 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||| | ||||||||| ||||||| |||||| | |||||| ||||||| || |||||||||| |||||||| |
|
|
| T |
11117915 |
agcttcatgcactcaaagggcttaatctttcccgtaacagacttactggtcatattcccaactccataggaaacttggcatacttggaatctttggatct |
11117816 |
T |
|
| Q |
214 |
ctcgtcaaatattctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaata |
313 |
Q |
| |
|
|| |||||||| | || || |||||||||||||||||||||||||| | |||||||||||| ||| |||| ||||||||||| |||||||||||| |
|
|
| T |
11117815 |
ttcatcaaatatgttaaccagtgtgattcctgcagaattaaccaatttgggctttcttgaagtcttagatatttcaaataaccatctagtgggagaaata |
11117716 |
T |
|
| Q |
314 |
cctcaaggaaagcaattcaatacatttac |
342 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11117715 |
cctcaaggaaagcaattcaatacatttac |
11117687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 26 - 342
Target Start/End: Original strand, 25523264 - 25523580
Alignment:
| Q |
26 |
atgacattggtaaaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggagaacttcacgcac |
125 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||| |||||||||| ||||||||||| ||| | |||| |||||||||| ||| ||||| ||||| |||| |
|
|
| T |
25523264 |
atgaaattggtgaaaattccaataaagtttgtatctattgatttttcaagaaacaaatttgaaggagagattccaaatgctattggagagcttcatgcac |
25523363 |
T |
|
| Q |
126 |
tcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatctctcgtcaaatat |
225 |
Q |
| |
|
||||||||||||||||||| || |||||||| || |||| |||||| |||||||| |||||||||| |||||||||| ||||||| || ||||| |
|
|
| T |
25523364 |
tcaaagggcttaacctttcccacaacagacttaccggtcatattcccaaatccataggaaacttgacatacttggaatctctggatctttccctgaatat |
25523463 |
T |
|
| Q |
226 |
tctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaag |
325 |
Q |
| |
|
| || ||| |||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
25523464 |
gttaaccggtgtgattcctgcggaattaaccaatttaaactttcttgaagtcatgaatctttccaataaccatttggtgggagaaatacctagaggaaag |
25523563 |
T |
|
| Q |
326 |
caattcaatacatttac |
342 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
25523564 |
caattcaacacatttac |
25523580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 24140702 - 24140436
Alignment:
| Q |
14 |
aaagggatcaatatgacattggtaaaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggag |
113 |
Q |
| |
|
||||||| ||| |||||| |||| |||||||||| ||| ||||||| ||| ||| | ||||||||||| ||| | |||| |||||||||| ||| |||| |
|
|
| T |
24140702 |
aaagggaccaaaatgacactggtgaaaattccaaaaaagtttgtaagtatcgatatgtcaagaaacaaatttgaaggagagattccaaatgctatcggag |
24140603 |
T |
|
| Q |
114 |
aacttcacgcactcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatct |
213 |
Q |
| |
|
| ||||| |||||||||||| |||||||||| ||||||||||| ||||||| |||||| |||||||| ||| |||||| |||||||||| ||| |||| |
|
|
| T |
24140602 |
agcttcatgcactcaaagggattaacctttcccataacagacttactggtcatattccccaatccatcggaaagttgacatacttggaatctttgaatct |
24140503 |
T |
|
| Q |
214 |
ctcgtcaaatattctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttg |
280 |
Q |
| |
|
|| |||||||| | || || |||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
24140502 |
ttcatcaaatatgttaaccggcgtgattccttcggaattaaccaatatgaacagtcttgaagtcttg |
24140436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 342
Target Start/End: Complemental strand, 8522951 - 8522647
Alignment:
| Q |
38 |
aaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggagaacttcacgcactcaaagggctta |
137 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| ||||||||||| ||| | || | |||||||| ||| || || ||||| ||| ||| |||||||| |
|
|
| T |
8522951 |
aaaattccaaacaactttgtaattattgatttgtcaagaaacaaatttgaaggcgagattccaaagattattggtgagcttcatgcaatcatagggctta |
8522852 |
T |
|
| Q |
138 |
acctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatctctcgtcaaatattctcactggtat |
237 |
Q |
| |
|
||||||| ||||||||||| || |||| |||||| |||||||| |||||||||| |||||||||| |||||||| || |||||||| | || | | | |
|
|
| T |
8522851 |
acctttcccataacagacttacaggtcatattcccaaatccataggaaacttgacatacttggaatctttggatctttcctcaaatatgttaaccgatgt |
8522752 |
T |
|
| Q |
238 |
gattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaagcaattcaataca |
337 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8522751 |
gattcctttggaattaaccaatcttaacagtcttgaagtcttggatctttccaataatcgtcttgtgggagaaatacctcagggaaagcaattcaataca |
8522652 |
T |
|
| Q |
338 |
tttac |
342 |
Q |
| |
|
||||| |
|
|
| T |
8522651 |
tttac |
8522647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 11994618 - 11994928
Alignment:
| Q |
14 |
aaagggatcaatatgacattggtaaaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggag |
113 |
Q |
| |
|
||||||| ||| ||||||| ||| |||||||||| | ||| |||| ||||||||| ||||||||||| ||| | |||| |||||||||| ||| | | |
|
|
| T |
11994618 |
aaagggaacaaaatgacatgggttaaaattccaaacatcttagtaattattgatttgtcaagaaacaaatttgaaggagagattccaaatgttattgatg |
11994717 |
T |
|
| Q |
114 |
aacttcacgcactcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatct |
213 |
Q |
| |
|
| ||||| ||||| | ||||||||||||||| ||||||||||| | |||||||||||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
11994718 |
agcttcaagcacttatagggcttaacctttcccataacagactcattggtcctattcccaaatccatgggaaacttgacaaacttggaatggctggatct |
11994817 |
T |
|
| Q |
214 |
ctcgtcaaatattctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaata |
313 |
Q |
| |
|
||| |||||||| ||||||| | ||||||| ||| |||||||||||||| | ||||| ||| || || |||||||||||||||| |||||||||||| |
|
|
| T |
11994818 |
ctcatcaaatatgctcactgatgtgattccagcaaaattaaccaatttgggctttcttgcagttttagacttttccaataaccatctagtgggagaaata |
11994917 |
T |
|
| Q |
314 |
cctcaaggaaa |
324 |
Q |
| |
|
|||| |||||| |
|
|
| T |
11994918 |
cctcgaggaaa |
11994928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 12248311 - 12248001
Alignment:
| Q |
14 |
aaagggatcaatatgacattggtaaaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggag |
113 |
Q |
| |
|
||||||| ||| ||||||| ||| |||||||||| | ||| |||| ||||||||| ||||||||||| ||| | |||| |||||||||| ||| | | |
|
|
| T |
12248311 |
aaagggaacaaaatgacatgggttaaaattccaaacatcttagtaattattgatttgtcaagaaacaaatttgaaggagagattccaaatgttattgatg |
12248212 |
T |
|
| Q |
114 |
aacttcacgcactcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccatactaaacttgacaaacttggaatcattggatct |
213 |
Q |
| |
|
| ||||| ||||| | ||||||||||||||| ||||||||||| | |||||||||||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
12248211 |
agcttcaagcacttatagggcttaacctttcccataacagactcattggtcctattcccaaatccatgggaaacttgacaaacttggaatggctggatct |
12248112 |
T |
|
| Q |
214 |
ctcgtcaaatattctcactggtatgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaata |
313 |
Q |
| |
|
||| |||||||| ||||||| | ||||||| ||| |||||||||||||| | ||||| ||| || || |||||||||||||||| |||||||||||| |
|
|
| T |
12248111 |
ctcatcaaatatgctcactgatgtgattccagcaaaattaaccaatttgggctttcttgcagttttagacttttccaataaccatctagtgggagaaata |
12248012 |
T |
|
| Q |
314 |
cctcaaggaaa |
324 |
Q |
| |
|
|||| |||||| |
|
|
| T |
12248011 |
cctcgaggaaa |
12248001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 32682134 - 32682306
Alignment:
| Q |
14 |
aaagggatcaatatgacattggtaaaaattccaataaactttgtaactattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggag |
113 |
Q |
| |
|
||||||| ||| |||||| | || |||||||||| ||||||||||| ||||||||| |||||||||| ||| | |||| |||||||||| ||| || | |
|
|
| T |
32682134 |
aaagggagcaaaatgacactagtgaaaattccaagaaactttgtaagtattgatttgtcaagaaacagatttgaaggagagattccaaatgctattgggg |
32682233 |
T |
|
| Q |
114 |
aacttcacgcac------tcaaagggcttaacctttcacataacagactaactggtcctattcctcaatccat |
180 |
Q |
| |
|
| ||||| |||| ||| ||||||||||||||| ||||||||||| || | || |||||| |||||||| |
|
|
| T |
32682234 |
agcttcatgcactcagaatcagagggcttaacctttcccataacagactcaccgatcatattccccaatccat |
32682306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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