View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16058_high_18 (Length: 339)

Name: NF16058_high_18
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16058_high_18
NF16058_high_18
[»] chr2 (1 HSPs)
chr2 (19-329)||(41491007-41491317)
[»] chr4 (1 HSPs)
chr4 (54-329)||(23858631-23858906)
[»] chr5 (3 HSPs)
chr5 (66-329)||(34207657-34207920)
chr5 (59-172)||(18301531-18301644)
chr5 (61-133)||(32000276-32000348)
[»] chr7 (5 HSPs)
chr7 (96-329)||(22313997-22314230)
chr7 (72-161)||(2867144-2867233)
chr7 (243-314)||(45506886-45506957)
chr7 (243-314)||(45512346-45512417)
chr7 (117-170)||(3745085-3745138)
[»] chr6 (1 HSPs)
chr6 (69-161)||(3814902-3814994)
[»] chr1 (1 HSPs)
chr1 (237-299)||(38165269-38165331)
[»] chr3 (5 HSPs)
chr3 (61-160)||(11591395-11591494)
chr3 (61-130)||(27477593-27477662)
chr3 (62-166)||(42965929-42966033)
chr3 (61-130)||(27488818-27488887)
chr3 (62-166)||(42974360-42974464)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 41491317 - 41491007
Alignment:
Q  19 ttaatgttaactttgttgtgactgttcggcttttcgtgtgtttaggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagc 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41491317 ttaatgttaactttgttgtgactgttcggctttttgtgtgtttaggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagc 41491218  T
Q  119 agcattaagcacagcactattcaataatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctggtagccct 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41491217 agcattaagcacagcactattcaacaatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctggtagccct 41491118  T
Q  219 tccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgatcttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41491117 tccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgatcttg 41491018  T
Q  319 ccatgcctatg 329  Q
    |||||||||||    
T  41491017 ccatgcctatg 41491007  T

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Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 54 - 329
Target Start/End: Complemental strand, 23858906 - 23858631
Alignment:
Q  54 gtgtgtttaggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaa 153  Q
    |||| |||||||||||||||||| || ||||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||  | ||||| |||||  |||    
T  23858906 gtgtttttaggaggagcatgtgggtacggaaatttgtacagtcaaggttacggagtgaacacagcagcattaagcactgctttgttcaacaatggtttaa 23858807  T
Q  154 gttgtggttcttgttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcc 253  Q
    | |||||| ||||||||||  | |||||||||||||||||  | |||||||| ||||| || ||||| |||||||| || ||||||||||||||||||||    
T  23858806 gctgtggtgcttgttttgagataaagtgtgcaaatgacaaagagtggtgtcattctgggagtccttcaattttcattactgctactaacttttgtcctcc 23858707  T
Q  254 taactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgatcttgccatgcctatg 329  Q
    ||| ||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  23858706 taattttgctcaagcaagtgataatggtggttggtgtaaccctcctcgtcctcattttgatcttgctatgcctatg 23858631  T

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Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 66 - 329
Target Start/End: Complemental strand, 34207920 - 34207657
Alignment:
Q  66 ggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggttctt 165  Q
    ||||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||  | |||||||| || |    
T  34207920 ggagcatgtggttatggaaatctgtatagtcaaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgt 34207821  T
Q  166 gttttgaattgaagtgtgcaaatgacaagcaatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctca 265  Q
    ||||||| || |||||| | |||||       ||||| ||| |||| || ||||| || ||  | || ||||| || |||||||| || || ||||||||    
T  34207820 gttttgagttaaagtgttccaatgatcctagttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctca 34207721  T
Q  266 acctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgatcttgccatgcctatg 329  Q
    | | ||||| ||||| ||||||||||||||||| || || |||||||||||||| |||||||||    
T  34207720 agcaagtgataatggaggttggtgtaaccctccacgaccacactttgatcttgctatgcctatg 34207657  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 18301644 - 18301531
Alignment:
Q  59 tttaggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgt 158  Q
    |||||| || |||||||| ||||||||| | || |||||||||||||||   ||||| || || |||||||||||  | ||||| | |||  |||| |||    
T  18301644 tttaggtggtgcatgtggatatggaaacctatacagtcaaggttatggaacaaacactgctgctttaagcacagctttgttcaacagtggtttaagctgt 18301545  T
Q  159 ggttcttgttttga 172  Q
    ||||||||||||||    
T  18301544 ggttcttgttttga 18301531  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 32000348 - 32000276
Alignment:
Q  61 taggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagc 133  Q
    ||||||| ||||||||||||||||| ||||| | |||||| ||||||   ||||| |||||| ||||||||||    
T  32000348 taggaggtgcatgtggttatggaaatttgtacaatcaaggatatggaacaaacactgcagcactaagcacagc 32000276  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 329
Target Start/End: Complemental strand, 22314230 - 22313997
Alignment:
Q  96 caaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagc 195  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||| |||||  ||||||||||  | ||||||||| | |||||||   | ||    |    
T  22314230 caaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccac 22314131  T
Q  196 aatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccc 295  Q
      |||||| || |||| | ||| || || || ||||| || || |||||||| ||||| || |||||||||||||||||||||||||| ||||| |||||    
T  22314130 gttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaaccc 22314031  T
Q  296 tcctcgtcctcactttgatcttgccatgcctatg 329  Q
     ||| | ||||||||||||||||| |||||||||    
T  22314030 acctagacctcactttgatcttgctatgcctatg 22313997  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 2867233 - 2867144
Alignment:
Q  72 tgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggt 161  Q
    ||||| ||||||||| | ||||| ||||||||||||   || ||||||||||| ||||| ||||||||||| |||||| | |||||||||    
T  2867233 tgtggatatggaaacctttatagccaaggttatggaacaaatacagcagcattgagcactgcactattcaacaatggattgagttgtggt 2867144  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 45506957 - 45506886
Alignment:
Q  243 ttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgat 314  Q
    |||||||| || |||||||| |  |||| ||||||||||||||||||||| || ||| | ||||||||||||    
T  45506957 ttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat 45506886  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 45512417 - 45512346
Alignment:
Q  243 ttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcctcgtcctcactttgat 314  Q
    |||||||| || |||||||| |  |||| ||||||||||||||||||||| || ||| | ||||||||||||    
T  45512417 ttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat 45512346  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 3745085 - 3745138
Alignment:
Q  117 gcagcattaagcacagcactattcaataatggactaagttgtggttcttgtttt 170  Q
    |||||| |||||||||| ||||||||||||||||| | ||||||| | ||||||    
T  3745085 gcagcactaagcacagctctattcaataatggacttacttgtggtgcatgtttt 3745138  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 3814994 - 3814902
Alignment:
Q  69 gcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggt 161  Q
    |||||||| |||||||||||||||||||||||||||||   ||| ||||||||| | ||||| ||| ||||||| |||||  | |||||||||    
T  3814994 gcatgtggatatggaaacttgtatagtcaaggttatgggactaatacagcagcacttagcactgcattattcaacaatggtttgagttgtggt 3814902  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 38165269 - 38165331
Alignment:
Q  237 actaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccctcct 299  Q
    ||||| |||||||| || ||||||||||  |||||||||||||||||||||||||| ||||||    
T  38165269 actaatttttgtcccccaaactttgctcttcctagtgacaatggtggttggtgtaatcctcct 38165331  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 11591395 - 11591494
Alignment:
Q  61 taggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtgg 160  Q
    |||| ||||||||||| ||||| ||||||||||| ||||| |||||   ||||||||| || |||||||| || |||||||| | |||| |||| |||||    
T  11591395 taggtggagcatgtggatatgggaacttgtatagccaagggtatgggactaacacagctgctttaagcactgctctattcaacagtggattaagctgtgg 11591494  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 27477662 - 27477593
Alignment:
Q  61 taggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcac 130  Q
    |||| ||||||||||| |||||||| |||||||| ||||| ||||||   |||||||||||| |||||||    
T  27477662 taggtggagcatgtggatatggaaatttgtatagccaaggatatggaaccaacacagcagcactaagcac 27477593  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 42965929 - 42966033
Alignment:
Q  62 aggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggt 161  Q
    |||||| || |||||||||||||| |||||||| ||||| ||||||   ||||| || ||| ||||||| || || ||||| |||||| | ||||||||     
T  42965929 aggaggggcttgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagcactgctcttttcaacaatggattgagttgtggg 42966028  T
Q  162 tcttg 166  Q
    |||||    
T  42966029 tcttg 42966033  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 27488887 - 27488818
Alignment:
Q  61 taggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcac 130  Q
    |||| ||||||||||| |||||||| || ||||| ||||| ||||||   |||||||||||| |||||||    
T  27488887 taggtggagcatgtggatatggaaatttatatagccaaggatatggaaccaacacagcagcactaagcac 27488818  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 42974360 - 42974464
Alignment:
Q  62 aggaggagcatgtggttatggaaacttgtatagtcaaggttatggagttaacacagcagcattaagcacagcactattcaataatggactaagttgtggt 161  Q
    |||||| || |||||||||||||| |||||||| ||||| ||||||   ||||| || ||| |||| || || || ||||| |||||| | ||||||||     
T  42974360 aggaggtgcttgtggttatggaaatttgtatagccaaggctatggaaccaacactgctgcactaagtactgctcttttcaacaatggattgagttgtggg 42974459  T
Q  162 tcttg 166  Q
    |||||    
T  42974460 tcttg 42974464  T

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