View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_high_20 (Length: 330)
Name: NF16058_high_20
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 38697389 - 38697710
Alignment:
| Q |
1 |
gcaaaagcaagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697389 |
gcaaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggat |
38697488 |
T |
|
| Q |
101 |
tgtttgcaggatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697489 |
tgtttgcaggatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattct |
38697588 |
T |
|
| Q |
201 |
aatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaacca |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697589 |
aatcaaaccagcagtgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaacca |
38697688 |
T |
|
| Q |
301 |
tacttcaaagatgttgatgatg |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
38697689 |
tacttcaaagatgttgatgatg |
38697710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 38628892 - 38628571
Alignment:
| Q |
1 |
gcaaaagcaagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggat |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628892 |
gcaaaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggat |
38628793 |
T |
|
| Q |
101 |
tgtttgcaggatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattct |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628792 |
tgtttgcaggatggtctctctcagattgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattct |
38628693 |
T |
|
| Q |
201 |
aatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaacca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
38628692 |
aatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctctacggatgaacatgttgtcttgtagaaacca |
38628593 |
T |
|
| Q |
301 |
tacttcaaagatgttgatgatg |
322 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
38628592 |
tacttcaaagatgtcgatgatg |
38628571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 14256401 - 14256293
Alignment:
| Q |
175 |
acaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcgg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | || || || ||||||||||||||||||| | || ||||| || |||||||| || | |
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| T |
14256401 |
acaaagcaatcatgaaaatgcattctaatcaatccagcacctataccaggattgagtgaaacagctttgtcaattgcacttctcactattgcctcagcag |
14256302 |
T |
|
| Q |
275 |
atggacatg |
283 |
Q |
| |
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||||||||| |
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| T |
14256301 |
atggacatg |
14256293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 30652277 - 30652335
Alignment:
| Q |
9 |
aagaatgtctgcacaggacaccgttttgggacatgcagcctctatttgtgccttagctt |
67 |
Q |
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||||||||||||||| | || ||||| |||||||| ||||||||||||| |||||||| |
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| T |
30652277 |
aagaatgtctgcacacaagacagttttaggacatgcggcctctatttgtgtcttagctt |
30652335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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