View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16058_high_24 (Length: 286)
Name: NF16058_high_24
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_high_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 41573093 - 41573368
Alignment:
| Q |
1 |
tgaagtgctaacttcctctcatgaaaaccgtttgagatggaggttctatagttactaatttccttttccatttttgcaaattttaatttctcgtatgtct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41573093 |
tgaagtgctaacttcctctcatgaaaaacgtttgagatggaggttctatagttactaatttccttttccatttttgcaaattttaatttctcgtatgtct |
41573192 |
T |
|
| Q |
101 |
taattcactcactattgtaagttagagaccatttctgttggttcttttaattacatcaaaactactttggacagtgagatcctgttagcagactacatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41573193 |
taattcactcactattgtaagttagagaccatttctgttggttcttttaattacatcaaaactactttggacagtgagatcctgttagcagactacatta |
41573292 |
T |
|
| Q |
201 |
gaatgccaaatatgcgtagtcttccaaaattcatgcaaatttcactgattcgaatatattactcatgatgatgatg |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41573293 |
gaatgccaaatatgcgtagtcttccaaaattcatgcaaatttcactgattcgaatatattactcatgatggtgatg |
41573368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 41618890 - 41619101
Alignment:
| Q |
1 |
tgaagtgctaacttcctctcatgaaaaccgtttgagatggaggttctatagttactaatttccttttccatttttgcaaattttaatttctcgtatgtct |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
41618890 |
tgaagtgctaatttcctctcatgaaaaa-gtttgagatggaagttctatagttacaattttccttttccatttttgcaaatattcatttctcgtatgtcg |
41618988 |
T |
|
| Q |
101 |
taattcactcactattgtaagttagagaccatttctgttggttcttttaattacatcaaaactactttggacagtgagatcctgttagcagactacatta |
200 |
Q |
| |
|
| || | |||||||||||||| ||| |||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
41618989 |
tc-ttaattcactattgtaagtcagacaccattgttggtggctcttttaattacatcaaaactactttggatagtgagatcctgttagcagactatatta |
41619087 |
T |
|
| Q |
201 |
gaatgccaaatatg |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41619088 |
gaatgccaaatatg |
41619101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University