View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16058_high_34 (Length: 222)

Name: NF16058_high_34

Description: NF16058

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16058_high_34

[»] chr2 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 186; E-Value: 1e-101

Query Start/End: Original strand, 14 - 199

Target Start/End: Original strand, 41491354 - 41491539

Alignment:

Q	14	atataacatgttatgttatgttagtgtgttacattattaaagtactagacatacccatggtgcccgaagcatcggagccaccgtagaaagtggcatgagc	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41491354	atataacatgttatgttatgttagtgtgttacattattaaagtactagacatacccatggtgcccgaagcatcggagccaccgtagaaagtggcatgagc	41491453	T

Q	114	tgtttgccatgcaccaccattgtaaacacctgggattctagcatctaccatccacattgttaatgacataataagagtcacaacgt	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41491454	tgtttgccatgcaccaccattgtaaacacctgggattctagcatctaccatccacattgttaatgacataataagagtcacaacgt	41491539	T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 62 - 155

Target Start/End: Original strand, 23859010 - 23859103

Alignment:

Q	62	acatacccatggtgcccgaagcatcggagccaccgtagaaagtggcatgagctgtttgccatgcaccaccattgtaaacacctgggattctagc	155	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|
T	23859010	acatacccatggtgccagaagcatcagatccaccatagaaagtagcatgagcatcttgccattgaccaccagagtaaacaccaggaattctagc	23859103	T

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