View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_high_36 (Length: 220)
Name: NF16058_high_36
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 31188157 - 31187969
Alignment:
| Q |
17 |
aagaatatatcatattacagtgaatctgtgatcttactattgtattattatgtttgcata---atttaggaagaaacagacaaacacacacttaaacggg |
113 |
Q |
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| T |
31188157 |
aagaatatatcatattacagtgaatctgtgatcttactattgtattattatgtttgcatactaatttaggaagaaacagacaaacacacacttaaacggg |
31188058 |
T |
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| Q |
114 |
gtctcacatattcaacattccttcagtcattcctggtaatatatatgtccatttatatatcttcaatgtccctattgatcccgagcttc |
202 |
Q |
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| T |
31188057 |
gtctcacatattcaacattccttcagtcattcctggtaatatatatgtccatttatatatcttcaatgttcctattgatcccgagcttc |
31187969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 31010268 - 31010081
Alignment:
| Q |
18 |
agaatatatcatattacagtgaatctgtgatcttactattgtattattatgtttgcata---atttaggaagaaacagacaaacacacacttaaacgggg |
114 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |
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| T |
31010268 |
agaatatatcatgttagtgtgaatctgtgatcttactattgtattattatgtttgcatactaatttaggaagaaacagacaaacacacacttacacaggg |
31010169 |
T |
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| Q |
115 |
tctcacatattcaacattccttcagtcattcctggtaatatatatgtccatttatatatcttcaatgtccctattgatcccgagcttc |
202 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
31010168 |
tctcacacattcaacattccttcagtcattcctggtaatatatatgtgcatttatataacttcaatgtccctattgatcccgagcttc |
31010081 |
T |
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