View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16058_high_37 (Length: 208)

Name: NF16058_high_37
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16058_high_37
NF16058_high_37
[»] chr8 (15 HSPs)
chr8 (42-187)||(4746106-4746251)
chr8 (25-181)||(4726777-4726933)
chr8 (76-191)||(4689550-4689665)
chr8 (25-190)||(4996974-4997140)
chr8 (25-184)||(4775937-4776101)
chr8 (25-190)||(4737324-4737490)
chr8 (17-190)||(4681973-4682147)
chr8 (25-189)||(10447914-10448073)
chr8 (25-190)||(4912879-4913043)
chr8 (78-182)||(4923585-4923686)
chr8 (25-190)||(4900473-4900639)
chr8 (25-190)||(21438819-21438988)
chr8 (76-184)||(4716102-4716207)
chr8 (63-184)||(4889458-4889576)
chr8 (31-184)||(4704066-4704220)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 4746251 - 4746106
Alignment:
Q  42 tttttgaatttatgcatatgctttaaggaattacaaacttacaaagatgtgattcttggggggttatttccatcatcaatactgcagtttaggccttccc 141  Q
    |||||||||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||     
T  4746251 tttttgaatttatgcatatggttgaaggaattataaacttacaaatatgtgattcttggggggttatttccaccatcaatactgcagtttaggcattcct 4746152  T
Q  142 acatatacttcacaggaccacatggatctccttgccaatttctcgc 187  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  4746151 acatatactgcacaggaccacatggatctccttgccaatttctcgc 4746106  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 4726933 - 4726777
Alignment:
Q  25 tcagaggataatttaagtttttgaatttatgcatatgctttaaggaattacaaacttacaaagatgtgattcttggggggttatttccatcatcaatact 124  Q
    ||||||||||||| ||||||| ||||||||||||||| |||| ||  ||| ||||||||||| || ||||||||  ||||||||||||| ||||||||||    
T  4726933 tcagaggataattaaagttttggaatttatgcatatggtttatggttttataaacttacaaatatatgattcttttggggttatttccaccatcaatact 4726834  T
Q  125 gcagtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatt 181  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  4726833 gcagtttaagccttcccacatatatttcacgggaccacatggatctccctgccaatt 4726777  T

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Target: chr8; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 4689665 - 4689550
Alignment:
Q  76 aaacttacaaagatgtgattcttggggggttatttccatcatcaatactgcagtttaggccttcccacatatacttcacaggaccacatggatctccttg 175  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  4689665 aaacttacaaagatgtgattcttggggggttattggcatcatcaatactacaatttaggccttcccacatataattcacaggaccacatggatctccttg 4689566  T
Q  176 ccaatttctcgccact 191  Q
    ||||||||| ||||||    
T  4689565 ccaatttctagccact 4689550  T

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Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 4997140 - 4996974
Alignment:
Q  25 tcagaggataatttaagtttttgaatttatgcatatg----ctttaaggaattacaaacttacaaagatgtgattcttggggggttatttccatcatcaa 120  Q
    ||||||||||||| |||||||||||||||||||||||     |||||||||||| |||| |||||||||||||||||||||  |||||| |   ||||||    
T  4997140 tcagaggataattcaagtttttgaatttatgcatatggtttatttaaggaattataaacctacaaagatgtgattcttgggatgttattgc---catcaa 4997044  T
Q  121 tactgcagtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatttctcgccac 190  Q
     ||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| |||||    
T  4997043 gactgcagtttaggccttcccacatataattcacaggggcacatggatctccttgccaatttctagccac 4996974  T

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Target: chr8; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 4775937 - 4776101
Alignment:
Q  25 tcagaggataatttaagtttttg-aatttatgcatatg----ctttaaggaattacaaacttacaaagatgtgattcttggggggttatttccatcatca 119  Q
    ||||||||||||| ||||||||| ||||||||||||||     ||||||| |||  |||||||||||||||||||||||||||| |||||  ||||||||    
T  4775937 tcagaggataattaaagtttttgaaatttatgcatatggttaatttaagggattgtaaacttacaaagatgtgattcttgggggattattgtcatcatca 4776036  T
Q  120 atactgcagtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatttct 184  Q
     | || ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  4776037 gtgctacagtttaggccttcccacatataattcacaggggcacatggatctccttgccaatttct 4776101  T

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Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 4737490 - 4737324
Alignment:
Q  25 tcagaggataatttaagtttttgaatttatgcatatg----ctttaaggaattacaaacttacaaagatgtgattcttggggggttatttccatcatcaa 120  Q
    ||||||||||||| |||||||||||||||||||||||     |||||||||||| |||||||||||||||||||||||||   |||||| |   |||||     
T  4737490 tcagaggataattgaagtttttgaatttatgcatatggtttatttaaggaattataaacttacaaagatgtgattcttggaatgttattgc---catcac 4737394  T
Q  121 tactgcagtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatttctcgccac 190  Q
    |||| |||||||||||||||||||| || ||||||||  ||||||||||||||||||||||||| |||||    
T  4737393 tactacagtttaggccttcccacatgtaattcacaggggcacatggatctccttgccaatttcttgccac 4737324  T

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Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 4682147 - 4681973
Alignment:
Q  17 atatagcatcagaggataatttaagtttttgaatttatgcatatgcttta----aggaattacaaacttacaaagatgtgattcttggggggttatttcc 112  Q
    ||||| ||| |||||||| || ||||||||||||||||||||||| ||||    ||| |||  ||||||||||||||||||||||||||  |||||| ||    
T  4682147 atataacattagaggatacttgaagtttttgaatttatgcatatgatttatttaagggattgtaaacttacaaagatgtgattcttgggatgttattgcc 4682048  T
Q  113 atcatcaatactgcagtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatttctcgccac 190  Q
    ||||   | ||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| |||||    
T  4682047 atca---agactgcagtttaggccttcccacatatagtttactggaccacatggatctccctgccaatttctagccac 4681973  T

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Target: chr8; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 10448073 - 10447914
Alignment:
Q  25 tcagaggataatttaagtttttgaatttatgcatatgctttaaggaattacaaacttacaaagatgtgattcttggggggttatttccatcatcaatact 124  Q
    |||||||| |||| ||||||||||||||||| ||||  ||||||  |||  ||||||||||||||||||||||| |   |||||| |   ||||||||||    
T  10448073 tcagaggacaattaaagtttttgaatttatgtatat--tttaagtgattctaaacttacaaagatgtgattctttgaatgttattgc---catcaatact 10447979  T
Q  125 gcagtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatttctcgcca 189  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||    
T  10447978 acagtttaggccttcccacatatacttcactggaccacatggatctccattccaatttctagcca 10447914  T

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Target: chr8; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 4912879 - 4913043
Alignment:
Q  25 tcagaggataatttaagtttttgaatttatgcata--tgctttaaggaattacaaacttacaaagatgtgattcttggggggttatttccatcatcaata 122  Q
    ||||||||||||| ||||| ||||||||||| ||   |  ||||||||||   |||||||||||||||||||||||||   | |||  ||||||   |||    
T  4912879 tcagaggataattgaagttcttgaatttatgtatggtttatttaaggaatggtaaacttacaaagatgtgattcttggaatgctatagccatca---ata 4912975  T
Q  123 ctgcagtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatttctcgccac 190  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  4912976 ctacagtttaggccttcccacatataattcacaggaccacatggatctccttgccaatttctagccac 4913043  T

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Target: chr8; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 4923585 - 4923686
Alignment:
Q  78 acttacaaagatgtgattcttggggggttatttccatcatcaatactgcagtttaggccttcccacatatacttcacaggaccacatggatctccttgcc 177  Q
    ||||||||||||||||||||||||||||||| ||||||| |    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  4923585 acttacaaagatgtgattcttggggggttatatccatcaacg---ctgcagtttaggccttcccatatatacttcacagggccacatggatctccttgcc 4923681  T
Q  178 aattt 182  Q
    |||||    
T  4923682 aattt 4923686  T

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Target: chr8; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 4900473 - 4900639
Alignment:
Q  25 tcagaggataatttaagtttttgaatttatgcata----tgctttaaggaattacaaacttacaaagatgtgattcttggggggttatttccatcatcaa 120  Q
    |||||| | |||| ||||||||||| |||||||||    |  |||||||||||  |||||||||||||||||||||||||   | |||  ||||||   |    
T  4900473 tcagagcacaattgaagtttttgaagttatgcatacagtttatttaaggaattgtaaacttacaaagatgtgattcttggaatgctatagccatca---a 4900569  T
Q  121 tactgcagtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatttctcgccac 190  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  4900570 tactacagtttaggacttcccacatatatttcacaggaccacatggatctccttgccaatttctagccac 4900639  T

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Target: chr8; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 21438819 - 21438988
Alignment:
Q  25 tcagaggataatttaagtttttgaatt---tatgcatatgcttta----aggaattacaaacttacaaagatgtgattcttggggggttatttccatcat 117  Q
    ||||||||||||| |||||||||||||   | |||||||| ||||    ||||||   ||||||||||||||||||||||||||  | ||| ||   |||    
T  21438819 tcagaggataattgaagtttttgaattatatttgcatatggtttatttaaggaatagtaaacttacaaagatgtgattcttgggatgctatatc---cat 21438915  T
Q  118 caatactgcagtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatttctcgccac 190  Q
    |||| || || |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  21438916 caatgctacaatttaggccttcccacatataattcccaggaccacatggatctccttgccaatttctagccac 21438988  T

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Target: chr8; HSP #13
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 4716207 - 4716102
Alignment:
Q  76 aaacttacaaagatgtgattcttggggggttatttccatcatcaatactgcagtttaggccttcccacatatacttcacaggaccacatggatctccttg 175  Q
    ||||||||| ||||||||||||||||  | |||  ||||||   ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  4716207 aaacttacagagatgtgattcttgggatgctatagccatca---atactacaatttaggccttcccacatataattcacaggaccacatggatctccttg 4716111  T
Q  176 ccaatttct 184  Q
    |||||||||    
T  4716110 ccaatttct 4716102  T

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Target: chr8; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 4889458 - 4889576
Alignment:
Q  63 tttaaggaattacaaacttacaaagatgtgattcttggggggttatttccatcatcaatactgcagtttaggccttcccacatatacttcacaggaccac 162  Q
    |||||||||||  | |||||||||||| |||||||||||  |||||| |||||   ||||||||||||||||||||||||||  || ||||||||  |||    
T  4889458 tttaaggaattgtatacttacaaagatatgattcttgggatgttattgccatc---aatactgcagtttaggccttcccacacgtaattcacaggggcac 4889554  T
Q  163 atggatctccttgccaatttct 184  Q
    |||||||||||| |||||||||    
T  4889555 atggatctccttcccaatttct 4889576  T

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Target: chr8; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 4704220 - 4704066
Alignment:
Q  31 gataatttaagtttttgaatttatgcatatgcttta----aggaattacaaacttacaaagatgtgattcttggggggttatttccatcatcaatactgc 126  Q
    ||||||| ||||| ||||||||||| ||||| ||||    ||| |||  ||||||||||||||||||||||||||  | ||||  |||||   ||| | |    
T  4704220 gataattgaagttcttgaatttatggatatgatttatttaagggattgtaaacttacaaagatgtgattcttgggatgctattggcatca---atagtac 4704124  T
Q  127 agtttaggccttcccacatatacttcacaggaccacatggatctccttgccaatttct 184  Q
    |||||| |||||||||||| || ||||||||  |||||||||||||||||||||||||    
T  4704123 agtttacgccttcccacatgtaattcacagggacacatggatctccttgccaatttct 4704066  T

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