View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_10 (Length: 428)
Name: NF16058_low_10
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_10 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: scaffold0141 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 187 - 423
Target Start/End: Complemental strand, 6329 - 6093
Alignment:
| Q |
187 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
286 |
Q |
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| T |
6329 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
6230 |
T |
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| Q |
287 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgctgcccacaacataaaggggctcattactcgttttcgtattggattgggatgggac |
386 |
Q |
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| T |
6229 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgctgcccacaacataaaggggctcattactcgttttcgtattggattgggatgggac |
6130 |
T |
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| Q |
387 |
tatccaataaggaattcccttcttctttcatctcact |
423 |
Q |
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| T |
6129 |
tatccaataaggaattcccttcttctttcatttcact |
6093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 167 - 336
Target Start/End: Original strand, 49237921 - 49238090
Alignment:
| Q |
167 |
cagactgcctctttctagatagattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgc |
266 |
Q |
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| T |
49237921 |
cagactgcctatttctagatagattctatggatgatgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccaatgcatgtcgtac |
49238020 |
T |
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| Q |
267 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgctgccc |
336 |
Q |
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| T |
49238021 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgctgccc |
49238090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 44285712 - 44285603
Alignment:
| Q |
12 |
gagaagaactagcaagaaatgcagacttcgctccgcacctttaggtaaagatccccattgtccaatcttcctttaatggatatattcttaaatgtaactt |
111 |
Q |
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| T |
44285712 |
gagaagaactagcaagaaatgccgaatttgctccgcatcgttaggtaaagatccccattggccaatcttcctttaatggatatattcttcaatgtaactt |
44285613 |
T |
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| Q |
112 |
ccggtaagaa |
121 |
Q |
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| T |
44285612 |
ccggtaagaa |
44285603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 44070301 - 44070410
Alignment:
| Q |
12 |
gagaagaactagcaagaaatgcagacttcgctccgcacctttaggtaaagatccccattgtccaatcttcctttaatggatatattcttaaatgtaactt |
111 |
Q |
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|||||||||||||||||||||| || ||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
44070301 |
gagaagaactagcaagaaatgccgaattcgctccgcattgtaaggtaaagatctccattgtccaatcttgctttaatggatatattcttcaatgtaactt |
44070400 |
T |
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| Q |
112 |
ccggtaagaa |
121 |
Q |
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| T |
44070401 |
ctggtaagaa |
44070410 |
T |
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